Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_O06
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 171 4e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 170 7e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 168 3e-42
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 54 7e-08
07_01_0344 - 2490700-2493249 30 0.99
03_03_0162 - 14964106-14964644,14964810-14965020 29 3.0
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 27 7.0
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 27 7.0
02_05_0398 - 28644632-28644889,28644997-28645032,28645101-286453... 27 7.0
07_03_0197 - 15006295-15006612 27 9.2
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 171 bits (415), Expect = 4e-43
Identities = 79/121 (65%), Positives = 99/121 (81%)
Frame = +2
Query: 116 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMP 295
A + G + +A ++RIRITL+S+NV++LE+VCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 296 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 475
TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 476 D 478
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 170 bits (413), Expect = 7e-43
Identities = 83/126 (65%), Positives = 102/126 (80%), Gaps = 4/126 (3%)
Frame = +2
Query: 113 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKG 280
MAAA V G + +A ++RIRITL+S+NV++LE+VCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 281 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 460
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEV
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 461 EVTIAD 478
EVTIAD
Sbjct: 121 EVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 168 bits (408), Expect = 3e-42
Identities = 80/121 (66%), Positives = 100/121 (82%)
Frame = +2
Query: 116 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMP 295
A + SGK + EV HRIRITL+S++V++LE+VC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 296 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 475
TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
Query: 476 D 478
D
Sbjct: 127 D 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 54.0 bits (124), Expect = 7e-08
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Frame = +2
Query: 164 VSPIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 343
++P +IRI L S V +E+ C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 344 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 472
+ F++R H+R+ID+ P ++ + + + + GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 0.99
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 180 RWIGETSAWGFSMSLPDTTAAA 115
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>03_03_0162 - 14964106-14964644,14964810-14965020
Length = 249
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 137 CLTLQRLPCCLLNSGRDKQLFNQKLFSAEPEKPHVSVTFERA 12
C L+R+ C +K F+Q L E+PH +++F RA
Sbjct: 31 CNRLKRIFACGCAGRTEKLRFSQTLSRFRLEQPHATISFVRA 72
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +1
Query: 181 HQDHSYFTQCALARGGLC*PNQWSQETEAACKG--PSPH---ANQDPA 309
H S +CAL R G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 208 CALARGGLC*PNQWSQETEAACKGPSP 288
C LA GL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>02_05_0398 -
28644632-28644889,28644997-28645032,28645101-28645364,
28645439-28645522,28645718-28645798,28645888-28645965,
28646571-28646672,28646754-28646849,28646955-28647161,
28647246-28647493,28647577-28647773,28647997-28648112
Length = 588
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 92 GRNSTSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEEVCADLI 244
G ++T + AVV + K +V IT T RN L+E C+D I
Sbjct: 272 GTHTTGSRGFAVVLDQTELKENRKVGRAELYVITHTKRNGEPLDEYCSDKI 322
>07_03_0197 - 15006295-15006612
Length = 105
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +2
Query: 125 VVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEEVCADLINGAKKQKLRVKGPVRMPTKI 304
+V K KP +++ P + I ITL + E ++N K Q L R T I
Sbjct: 1 MVDNKQTSKPPSDIGPDNIIPITLDKLTPEQMLEY-EQMMNNLKSQCLHSFKQTRSGTVI 59
Query: 305 LRITTRKTP 331
R + P
Sbjct: 60 QRYKLKMVP 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,992
Number of Sequences: 37544
Number of extensions: 337675
Number of successful extensions: 834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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