Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_O04
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 66 7e-12
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 64 2e-11
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 57 3e-09
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 55 1e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 52 9e-08
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 52 9e-08
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 50 3e-07
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 50 5e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 49 6e-07
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 48 1e-06
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 47 3e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 47 3e-06
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 8e-06
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 44 2e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 3e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 42 1e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 41 2e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 41 2e-04
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 41 2e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 41 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 5e-04
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 7e-04
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 38 0.002
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 38 0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 38 0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.002
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 37 0.003
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 37 0.004
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.006
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 36 0.008
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.011
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 34 0.025
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.025
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 33 0.033
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 32 0.077
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 31 0.24
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.72
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 28 1.7
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.9
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.9
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 27 3.8
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.8
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.8
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 65.7 bits (153), Expect = 7e-12
Identities = 34/90 (37%), Positives = 50/90 (55%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 651
L V G++ E ++ IFSK+G V V+++ + T SRGF F+ F +E+A A +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 652 TGMEIDGRRIRVDYSITQRAHTPTPGIYMG 741
E GR + V + R H+PTPG YMG
Sbjct: 163 NSQEFYGRVLNVQKAKRSRPHSPTPGKYMG 192
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P + + + LS T E I F++YGP+++++VV + TG+S G+ FV FE D K+A
Sbjct: 98 PYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVA 157
Query: 640 KNECTGMEIDGRRIRVD 690
G+ ++GRRI VD
Sbjct: 158 YKASAGLMLNGRRIVVD 174
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 56.8 bits (131), Expect = 3e-09
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +1
Query: 436 VRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 615
+R L+ S C+ V LS YTTE+QI +FSK G + ++ + +D T GFCFV +
Sbjct: 22 LRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYF 81
Query: 616 DMEDAKIAKNECTGMEIDGRRIRVD 690
+ +DA + + +D R IR D
Sbjct: 82 ENQDALDSLKYISRTSLDERIIRAD 106
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 651
L V L+ T + + + FS GP+ VV + +TG +RG+ FV F +EDA+ A E
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 652 TGMEIDGRRIRVDYSITQR 708
++ GR +R+D++ ++
Sbjct: 67 KNKKLHGRILRLDFATPRK 85
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/72 (37%), Positives = 42/72 (58%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
Q + FSK+G V ++++ GR GF FV+ +D + A+ A N G EIDGR I V
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGG-GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Query: 688 DYSITQRAHTPT 723
D+++++ A T
Sbjct: 181 DWAVSKDAFEAT 192
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
TEQ++ + F ++GP+ ++V D T RS G F+ F +D +
Sbjct: 289 TEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQ 332
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 52.0 bits (119), Expect = 9e-08
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 666
LS +Q + F +YG + +V++D ++GRS+G+ +V FE E AK A EI
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEI 329
Query: 667 DGRRIRVDYSITQRAHTPTP 726
DGR + +D S R P P
Sbjct: 330 DGRMVNLDLS-NPRPANPQP 348
Score = 48.0 bits (109), Expect = 1e-06
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
PS + V LS TE ++ F G + +++ D ++GR +GF +V F D++ AK
Sbjct: 364 PSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKC 423
Query: 640 KNECTGMEIDGRRIRVDYS 696
E G I GR R+D+S
Sbjct: 424 V-EMNGHFIAGRPCRLDFS 441
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 52.0 bits (119), Expect = 9e-08
Identities = 23/64 (35%), Positives = 39/64 (60%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
+EQQ+ IF++ GPV ++V+D +TG +G+ F F D E +A + E+ R+I
Sbjct: 19 SEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKI 78
Query: 682 RVDY 693
RV++
Sbjct: 79 RVEF 82
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 50.4 bits (115), Expect = 3e-07
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Frame = +1
Query: 505 EQQINHIFSKYG-PVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
E I +FS++G PVD + +V D +TG+S+GF F+ +ED +A + T +++ R +
Sbjct: 44 EDDILCVFSEFGEPVD-INLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
Query: 682 RVD----YSITQRAHTPTPGIYMGK 744
RVD Y + Q+ P + +G+
Sbjct: 103 RVDHVASYKVPQKEKEPANLVPLGE 127
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 49.6 bits (113), Expect = 5e-07
Identities = 26/79 (32%), Positives = 43/79 (54%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P L V L+ T ++ + IFS++G + QV+ D +TG S + F+ F++ E + A
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
Query: 640 KNECTGMEIDGRRIRVDYS 696
+ + ID RI VD+S
Sbjct: 302 YFKMQNVLIDDSRIHVDFS 320
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 49.2 bits (112), Expect = 6e-07
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
PT S L V L TE + +F+ GPV ++V DA T RS G+ +V F +MED +
Sbjct: 77 PT-SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGE 135
Query: 634 IAKNECTGMEIDGRRIRVDYS 696
A +E I GR R+ +S
Sbjct: 136 KALDELNYTLIKGRPCRIMWS 156
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
++++ FS +G + +++ D + G+S+GF FV + E+A A E + G+ +
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLY 435
Query: 685 V 687
V
Sbjct: 436 V 436
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/78 (32%), Positives = 40/78 (51%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
PS + V + E+Q+ IF + GPV Q+VID ++G+ +G+ F + D A A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 640 KNECTGMEIDGRRIRVDY 693
+ RR+RVD+
Sbjct: 63 VRNLNNYDAGTRRLRVDF 80
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/78 (30%), Positives = 44/78 (56%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 642
S L V LS T E+++ +F ++G + +V + D +TGR++GF FV + D + A A+
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 643 NECTGMEIDGRRIRVDYS 696
+ G + +R ++S
Sbjct: 261 DRLDGYGWNNLILRCEFS 278
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 46.8 bits (106), Expect = 3e-06
Identities = 26/98 (26%), Positives = 49/98 (50%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 642
S C+ V L T+++ + +F+ G V + ++ + TGRS+GF V FE+ DA +
Sbjct: 279 SDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSI 337
Query: 643 NECTGMEIDGRRIRVDYSITQRAHTPTPGIYMGKPTIS 756
+ G GR +++ Y+ P + G P+++
Sbjct: 338 EKLNGYRYGGRPLQLSYAHYATPLPAVPTVLSGLPSVA 375
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 45.6 bits (103), Expect = 8e-06
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V G+ TE+Q+ +F+ +GPV + + +D +TG +G+ + + +E A+ A +E
Sbjct: 14 VTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDE-KN 72
Query: 658 MEIDGRRIRVDYSITQ-RAHTPTPGI 732
+ + ++ VD++ + P P I
Sbjct: 73 LSLLDEKLEVDFAFLEPPERAPRPSI 98
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/87 (28%), Positives = 47/87 (54%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
N + L + LS T +++ +F +YGPV ++++ T ++RG FV +E+++DA
Sbjct: 7 NQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENVQDA 63
Query: 631 KIAKNECTGMEIDGRRIRVDYSITQRA 711
+ A + +G R + V Y +RA
Sbjct: 64 RRACEKLSGYNFMDRYLVVHYYNPERA 90
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 43.6 bits (98), Expect = 3e-05
Identities = 22/88 (25%), Positives = 44/88 (50%)
Frame = +1
Query: 424 LGDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
+ ++ R ++ + ++ L + L+ E + +F +G +++V + ID KT +GF +
Sbjct: 309 VSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAY 368
Query: 604 VYFEDMEDAKIAKNECTGMEIDGRRIRV 687
+ F D +DA A E GR + V
Sbjct: 369 IDFHDADDAVRAYLELDAKPFQGRLLHV 396
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 586 SRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 696
S GF FV F+D A A + G +DG ++ + S
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 562 VIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 711
V K G SR F F+ F++ EDA A ++ RI V ++ R+
Sbjct: 37 VAKTKEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRS 86
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRS-RGFCFVYFEDMEDAKIAKNECTGME 663
L T++ + + YG + V+V K RS RGF F F +A A
Sbjct: 728 LPFEATKKDVQSLLGAYGQLRSVRV--PKKFDRSARGFAFAEFVTAREAANAMRALKNTH 785
Query: 664 IDGRRIRVDYS 696
+ GR + + Y+
Sbjct: 786 LLGRHLVLQYA 796
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 41.5 bits (93), Expect = 1e-04
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 433 RVRLLENPTPS---RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCF 603
RV + +P P RC+ V L+ E+ + F G +D V++V D KT +GF +
Sbjct: 256 RVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAY 315
Query: 604 VYFEDM--EDAKIAKNECTGMEIDGRRIRV 687
+ F+D D + NE E GR +R+
Sbjct: 316 IQFKDTMGVDKALLLNEKKMPE--GRTLRI 343
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P R + V L+ T++ I IF YG +D + + I K+ ++G+C++ + + A A
Sbjct: 97 PLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANA 156
Query: 640 KNECTGMEIDGRRIRV 687
++ E+DG + V
Sbjct: 157 VDKMNNAELDGEELFV 172
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
+ L L E Q+ + +G + Q++ + G S+GFCF F++ DA++A + G
Sbjct: 314 ISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
Query: 658 MEIDGRRIRVDYS 696
+ G ++ ++
Sbjct: 374 KDTYGNKLHAQFA 386
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQ----INHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 627
P CL V L+ +E++ + F ++GP+ V+V+ K R + FV F++ +D
Sbjct: 77 PVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVL---KDWLQRPYSFVQFQNTDD 133
Query: 628 AKIAKNECTGMEIDGRRIRVDYSITQR 708
A A +E +DGR IR++ + R
Sbjct: 134 ASKALSEAQNTILDGRHIRIERAKVNR 160
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME 663
GL+ TT+ + F ++G V V+ D+ TGRSRGF F+ F++ + NE E
Sbjct: 169 GLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPK----CVNEVMSKE 224
Query: 664 --IDGRRIRVDYSITQRAHTPTPGIYMG 741
+DG+ I +I + T +++G
Sbjct: 225 HHLDGKIIDPKRAIPREEQEKTAKMFVG 252
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/62 (33%), Positives = 35/62 (56%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
TE++ + F+++G V +++D TGR RGF FV +E+ E A A + I G+ +
Sbjct: 259 TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPV 317
Query: 682 RV 687
V
Sbjct: 318 EV 319
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 487 LSLYTTEQQINHIF-SKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME 663
LS E + +F S+Y +++ D +T SRG+ FV F D D K A E G
Sbjct: 193 LSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQI 252
Query: 664 IDGRRIRVDYSITQ-RAHTPTP 726
R IRV + + +AH +P
Sbjct: 253 CGDRPIRVGLATPKSKAHVFSP 274
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +1
Query: 490 SLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEID 669
++ T + Q+ +FS +G + + +G S+G+ FV F +E A AK+ GM +
Sbjct: 392 TVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVG 451
Query: 670 GRRIRVDYS 696
+RI V ++
Sbjct: 452 KKRIFVCFA 460
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKI 636
E+Q+ FS++GPV ++++ + KTG S+ + F+ FE ++ A +
Sbjct: 118 EKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANV 161
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P++ L + + + IF + +V++V GR RG FV ++ +A +A
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMV----PGR-RGIAFVEYDSDREATVA 226
Query: 640 KNECTGMEIDGRRIRVDYS 696
KN TGM + G +I+V ++
Sbjct: 227 KNGTTGMSLSGNQIKVTFA 245
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.9 bits (84), Expect = 0.002
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V LS TE + F + V +++VID T RSRGF +V FE D A +G
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFE-TADTLSAALALSG 154
Query: 658 MEIDGRRIRVDYSITQRA 711
++ GR +R+ + +R+
Sbjct: 155 EDLMGRPVRITVAEPRRS 172
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 439 RLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF-- 612
+L E R + V L+ T +++ F + GPV Q+V D +GRS+G +V F
Sbjct: 231 KLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCH 290
Query: 613 EDMEDAKIA 639
ED A IA
Sbjct: 291 EDSVQAAIA 299
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 624
PS L V L TT+ + F + G + +V+++ TG+ +GF FV F D++
Sbjct: 226 PSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 36.7 bits (81), Expect = 0.004
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V L E+ + +F + P+ +V + D + GRS G C VYFE +DA+ A+
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYD-RAGRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 658 MEIDGRRIRV 687
+ G I++
Sbjct: 147 TNLKGSEIQI 156
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 35.9 bits (79), Expect = 0.006
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
++ + FS+Y + K +VV D + G++RGF FV F+D + A E G I R ++
Sbjct: 43 DESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVK 101
Query: 685 V 687
+
Sbjct: 102 L 102
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.5 bits (78), Expect = 0.008
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 645
R L V G +++ + F +GP+ + + I +T SR F FV +ED DA+ A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIP-RTRTSRPFAFVEYEDSRDAEDAYY 65
Query: 646 ECTG--MEIDGRRIRVDYS 696
E G +E G +RV+++
Sbjct: 66 EVHGRRLERGGGVLRVEWA 84
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
QQ+ +FSK+G + + T S+G+ FV F +A A N G+ +R+ V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 688 DYS 696
+Y+
Sbjct: 495 NYA 497
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 33.9 bits (74), Expect = 0.025
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSK-YGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECT 654
V L TE Q+ +F K GP +V + GRS+G + F DA A +
Sbjct: 59 VSNLPTDVTEAQVKELFVKSIGPCKRVSLAY-GPNGRSKGIATIIFSRPGDATRAYEQYE 117
Query: 655 GMEIDG-RRIRVD 690
G +DG R+++V+
Sbjct: 118 GRLVDGTRKMKVE 130
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.025
Identities = 17/70 (24%), Positives = 38/70 (54%)
Frame = +1
Query: 445 LENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDME 624
+E+ + +R + + GL T+++ + +++G V + +ID +T +G+ F FE+ +
Sbjct: 289 MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK 348
Query: 625 DAKIAKNECT 654
A I + T
Sbjct: 349 SALICISAMT 358
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 580 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 693
G RG F F E+A++ G EI+GRR+RV++
Sbjct: 240 GIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEW 277
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 32.3 bits (70), Expect = 0.077
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVY--FEDMEDAKIAKNECTGMEIDGRRIRVDYSI 699
F +YG + K+ + A + G VY ++ EDA A G DGR +R Y
Sbjct: 142 FGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGRHLRASYGT 201
Query: 700 TQ 705
T+
Sbjct: 202 TK 203
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.7 bits (66), Expect = 0.24
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDK------------VQVVIDAKTGRSRGF 597
P P + V GLS+ T + + +F Y P ++ + + R RGF
Sbjct: 201 PLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGF 260
Query: 598 CFVYFEDMEDAKIAKNECTGMEI 666
FV F + ED A E G ++
Sbjct: 261 GFVSFANAEDQSRAIEEMNGKQV 283
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 562 VIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 690
++D K GF FV ED DA+ N+ G E G RI V+
Sbjct: 30 ILDCKL--MNGFGFVEVEDARDARDIVNDFQGKEFMGSRIVVE 70
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = -3
Query: 224 RLRLCPLDITAGFGT----GSREPLRVLERLLSRSDIAMFVVNKRDKSEISRIFS-INTL 60
+L+ +D+ AG+GT G P R +ERL + + A+F + +++ S I L
Sbjct: 37 KLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHKVAGYSSPIVAL 96
Query: 59 KRSTSIYRRDRTLKT 15
++ +Y R +K+
Sbjct: 97 RKKMGLYANVRPVKS 111
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQIN-HIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK- 633
P++ + + GL+ E+ I +++ V V ++ + +T +SR F F F ++D+K
Sbjct: 69 PNQEIILQGLTPEILEEHIELALYATGAKVSTVTLIREKETQKSRCFAFAKFVSLQDSKD 128
Query: 634 -IAKNECTGMEIDGRRIRVDYSITQR 708
+ N T + IDG + V +S R
Sbjct: 129 WMEANFPT-LVIDGIDVSVRFSRAAR 153
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 605 TKQNPRERPVFASITTCTLSTGPYLEKIW 519
+K NP + P A++T C T +++K+W
Sbjct: 103 SKNNPNQNPQAAALTKCREQT--FVDKVW 129
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 666
+S TT + KY + + V I ++TG + + F+D+ DA+ A + +I
Sbjct: 142 ISPVTTNGSLKESLRKYSSI--IAVNIFSETGDLKKGIAI-FQDLSDAEQAVQYLSNCKI 198
Query: 667 DGRRI 681
DGR I
Sbjct: 199 DGRLI 203
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 3.8
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +1
Query: 463 SRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 642
S+ LGV + E ++ +F YG + +V V+ G V F D+ DA A
Sbjct: 873 SKSLGVTNVDGTVNEARLRSLFESYGKLYRV-VLHPEHEG-----AVVEFLDIHDAGKAS 926
Query: 643 NECTGMEIDGRRIRV 687
G EI GR + +
Sbjct: 927 LALEGHEIGGRLLHI 941
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V L+ TE + + F +G + V + K R + FV F++ EDAK A
Sbjct: 10 VGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAV-DRSYAFVEFDEPEDAKEAMENMNY 68
Query: 658 MEIDGRRIRV 687
+ R IRV
Sbjct: 69 SILCDRCIRV 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,196
Number of Sequences: 5004
Number of extensions: 54687
Number of successful extensions: 188
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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