Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_O04
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 121 6e-28
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 59 4e-09
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 58 7e-09
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 55 5e-08
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 55 5e-08
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 54 1e-07
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 54 1e-07
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 52 6e-07
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 51 8e-07
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 51 1e-06
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 51 1e-06
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 51 1e-06
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 50 2e-06
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 50 2e-06
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 50 2e-06
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 49 4e-06
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 48 1e-05
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 47 2e-05
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 47 2e-05
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 46 3e-05
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 46 3e-05
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 46 3e-05
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 46 4e-05
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 46 4e-05
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 46 4e-05
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 45 7e-05
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 45 7e-05
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 45 7e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 44 1e-04
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 44 1e-04
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 44 1e-04
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 44 1e-04
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 44 1e-04
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 44 2e-04
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 44 2e-04
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 42 6e-04
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 41 8e-04
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 41 0.001
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 41 0.001
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 40 0.001
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 38 0.010
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 37 0.014
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 37 0.018
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 37 0.018
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 37 0.018
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 36 0.031
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 35 0.055
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 35 0.055
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.072
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.072
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.072
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 35 0.072
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 35 0.072
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 35 0.072
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.072
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.17
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 33 0.17
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 33 0.17
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 30 1.6
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 30 1.6
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 30 1.6
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 29 2.7
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 29 2.7
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 29 2.7
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 29 4.7
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr... 29 4.7
AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical... 28 6.3
Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical pr... 28 8.3
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 121 bits (291), Expect = 6e-28
Identities = 50/98 (51%), Positives = 72/98 (73%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 627
ENP PS+CLGVF LS YTTE+ + +F ++G ++K +V D +G SRGF F+YF +ED
Sbjct: 70 ENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIED 129
Query: 628 AKIAKNECTGMEIDGRRIRVDYSITQRAHTPTPGIYMG 741
A A+++ ++DG +IRVD+S+T+R H+PTPG YMG
Sbjct: 130 ATAARDKLCNTDLDGHKIRVDFSLTKRGHSPTPGQYMG 167
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/64 (39%), Positives = 41/64 (64%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 678
TTE+++ + FS G ++ V++V D +TGR RGF F+ F + A+ A + G E +GR
Sbjct: 16 TTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRP 75
Query: 679 IRVD 690
+RV+
Sbjct: 76 LRVN 79
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/65 (40%), Positives = 42/65 (64%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
TE++I + F+ G V+ V++V D +TGR RGF FV F + A+ A + G+ +GR +
Sbjct: 18 TEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNL 77
Query: 682 RVDYS 696
RV+Y+
Sbjct: 78 RVNYA 82
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 58.0 bits (134), Expect = 7e-09
Identities = 29/80 (36%), Positives = 46/80 (57%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
N R + V +S +E I IFSK G V +++V D +TG+ +G+ F+ F D++ A
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72
Query: 631 KIAKNECTGMEIDGRRIRVD 690
++A G E+ GR +RVD
Sbjct: 73 EVAIRNLNGYELSGRILRVD 92
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/64 (40%), Positives = 41/64 (64%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 678
TTE + + FS+ G V V++V D +TGR RGF FV F + A+ A ++ G++ +GR
Sbjct: 15 TTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRA 74
Query: 679 IRVD 690
+RV+
Sbjct: 75 LRVN 78
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/64 (45%), Positives = 38/64 (59%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
E+++ IF KYG + V D K+GR F FV FED DA+ A G E DGRRIR
Sbjct: 22 EKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIR 77
Query: 685 VDYS 696
V+++
Sbjct: 78 VEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 55.2 bits (127), Expect = 5e-08
Identities = 29/64 (45%), Positives = 38/64 (59%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
E+++ IF KYG + V D K+GR F FV FED DA+ A G E DGRRIR
Sbjct: 22 EKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIR 77
Query: 685 VDYS 696
V+++
Sbjct: 78 VEFT 81
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME 663
GLS +E + +FS+YG V + ++ D TG+S+GF F+ ++D +A + G+
Sbjct: 44 GLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGIS 103
Query: 664 IDGRRIRVDY 693
+ R IRVD+
Sbjct: 104 LHKRMIRVDH 113
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P R L V ++ T+E ++ F YG + K+ +V D + G+ RG+ F+ + D + A
Sbjct: 102 PYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHD-EAGKPRGYAFIEYSDKAEMHTA 160
Query: 640 KNECTGMEIDGRRIRVDY 693
+ G+++DG+R+ VDY
Sbjct: 161 YKKADGIKVDGKRLVVDY 178
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+ F++ + + A
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 298
Query: 640 KNECTGMEIDGRRIRVDYS 696
+ + ID RRI VD+S
Sbjct: 299 FFKMDNVLIDDRRIHVDFS 317
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+ F++ + + A
Sbjct: 239 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 298
Query: 640 KNECTGMEIDGRRIRVDYS 696
+ + ID RRI VD+S
Sbjct: 299 FFKMDNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Frame = +1
Query: 460 PSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
P L V L+ TT++ + IFS++G ++ ++V D ++G S + F+ F++ + + A
Sbjct: 170 PENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQA 229
Query: 640 KNECTGMEIDGRRIRVDYS 696
+ + ID RRI VD+S
Sbjct: 230 FFKMDNVLIDDRRIHVDFS 248
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 51.2 bits (117), Expect = 8e-07
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 436 VRLLENPTPSRC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 612
VR E + C L V LS YT E Q+ +F + G V +V + +D GFCFV +
Sbjct: 26 VRDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEY 85
Query: 613 EDMEDAKIAKNECTGMEIDGRRIRVDY 693
EDA++A + +D R IR D+
Sbjct: 86 YTREDAELALQNISNTRMDDRVIRADW 112
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 627
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FV F +
Sbjct: 43 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 102
Query: 628 AKIAKNE 648
A+ A N+
Sbjct: 103 AESAMND 109
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 627
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FV F +
Sbjct: 63 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 122
Query: 628 AKIAKNE 648
A+ A N+
Sbjct: 123 AESAMND 129
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 627
++P R L + GLS TT++Q+ + FS++GPV V+ D T SRGF FV F +
Sbjct: 64 DSPPQLRKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFS 123
Query: 628 AKIAKNE 648
A+ A N+
Sbjct: 124 AESAMND 130
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/63 (41%), Positives = 33/63 (52%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 678
T E + +F KYG V +VQVVID KTG +GF V F E A A + G GR
Sbjct: 290 TKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRM 349
Query: 679 IRV 687
+ +
Sbjct: 350 MHI 352
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
TEQQ+ F KYG + + K G+ RGF FV F D A A + + +++
Sbjct: 15 TEQQLRKFFEKYGQISDASLKY-TKEGKFRGFAFVGFLDEGSASNALAKSNQTFFNSKKL 73
Query: 682 RVD 690
V+
Sbjct: 74 TVE 76
Score = 27.9 bits (59), Expect = 8.3
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSK-YGPVDKVQVV------IDAKTGRSRGFCFVYFEDMEDA 630
L V L+ TT+ + +F K YG + K + + S GF FV F DA
Sbjct: 643 LFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPLSMGFGFVQFYTAFDA 702
Query: 631 KIAKNECTGMEIDGRRIRVDYSITQRA 711
K A + G +DG + + S + A
Sbjct: 703 KTALKDMQGELLDGHSLELKISHRENA 729
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 645
R L V + E + +F K GPV V+++ + + S+GF FV ++ +DA A+
Sbjct: 100 RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDDADRARA 157
Query: 646 ECTGMEIDGRRIRVDYSITQRAH 714
E G I+GRR+ V+ + TQR H
Sbjct: 158 EFNGTTIEGRRVEVNLA-TQRVH 179
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 651
L + LS TT + F +YG + V + D + +S+GF FV F + DA+ A +
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 652 TGMEIDGRRIRV 687
G +DGR +RV
Sbjct: 81 DGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +1
Query: 472 LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC 651
L + LS TT + F +YG + V + D + +S+GF FV F + DA+ A +
Sbjct: 21 LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80
Query: 652 TGMEIDGRRIRV 687
G +DGR +RV
Sbjct: 81 DGKLVDGRELRV 92
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/83 (34%), Positives = 46/83 (55%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 645
R L V + E + +F K GPV V+++ + + S+GF FV ++ +DA A+
Sbjct: 100 RRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDDADRARA 157
Query: 646 ECTGMEIDGRRIRVDYSITQRAH 714
E G I+GRR+ V+ + TQR H
Sbjct: 158 EFNGTTIEGRRVEVNLA-TQRVH 179
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +1
Query: 466 RCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKN 645
R L V G + TE+ + F +G V + + +D ++G+ RGF FV F+ EDA +A +
Sbjct: 11 RTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAID 70
Query: 646 ECTGMEIDGRRIRVDYSITQRA 711
E+ G+ IRV+++ +A
Sbjct: 71 NMNESELFGKTIRVNFARPPKA 92
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +1
Query: 523 IFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSIT 702
+F K GPV V+++ + + S+GF FV ++ +DA A+ E G I+GRR+ V+ + T
Sbjct: 1 MFEKVGPVVDVEIIFNERG--SKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA-T 57
Query: 703 QRAH 714
QR H
Sbjct: 58 QRVH 61
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
P + L V + + + +F K+G V V+++ + + S+GF FV E +DA+
Sbjct: 149 PDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAE 206
Query: 634 IAKNECTGMEIDGRRIRVDYSITQRAHT----PTPGI 732
A+ E G I+GR+I V+ + T R H+ PT GI
Sbjct: 207 RARQELHGSMIEGRKIEVNCA-TARVHSKKVKPTGGI 242
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
P + L V + + + +F K+G V V+++ + + S+GF FV E +DA+
Sbjct: 149 PDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAE 206
Query: 634 IAKNECTGMEIDGRRIRVDYSITQRAHT----PTPGI 732
A+ E G I+GR+I V+ + T R H+ PT GI
Sbjct: 207 RARQELHGSMIEGRKIEVNCA-TARVHSKKVKPTGGI 242
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V +S E + F +GP+ + + D TG + F FV +E E A +A+ G
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNG 165
Query: 658 MEIDGRRIRVDYSITQRAHTP 720
+ GR ++V+ + Q P
Sbjct: 166 QMLGGRNLKVNSMMFQEMRLP 186
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V +S E + F +GP+ + + D TG + F FV +E E A +A+ G
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNG 165
Query: 658 MEIDGRRIRVDYSITQRAHTP 720
+ GR ++V+ + Q P
Sbjct: 166 QMLGGRNLKVNSMMFQEMRLP 186
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V +S E + F +GP+ + + D TG + F FV +E E A +A+ G
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNG 165
Query: 658 MEIDGRRIRVDYSITQRAHTP 720
+ GR ++V+ + Q P
Sbjct: 166 QMLGGRNLKVNSMMFQEMRLP 186
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
P +R L + L T +++ IF K+G V +++V T +RG FV +ED+ DAK
Sbjct: 15 PEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRV---GNTAETRGTAFVVYEDIFDAK 71
Query: 634 IAKNECTGMEIDGRRIRVDY 693
A +G + R + V Y
Sbjct: 72 TACEHLSGYNVSNRYLVVLY 91
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/92 (25%), Positives = 44/92 (47%)
Frame = +1
Query: 433 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 612
++ L R L + ++ T + + FS G V V+++ D++TGRS+G C+V F
Sbjct: 14 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 73
Query: 613 EDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 708
D E + G + G +++ + +R
Sbjct: 74 WDEESVPLGL-ALNGQRLMGAPLQIQRTCAER 104
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
E+ I IF +G ++K+ + +D+ +RGF + F + +DA+ + + E+ GR IR
Sbjct: 140 EKMIRDIFESFGRIEKIDLEVDSNR-ENRGFATITFRNADDAQKSCEQLNNFELAGRCIR 198
Query: 685 VDYSITQRAHTP 720
+ SI Q + P
Sbjct: 199 L--SIKQESQAP 208
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/92 (25%), Positives = 44/92 (47%)
Frame = +1
Query: 433 RVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYF 612
++ L R L + ++ T + + FS G V V+++ D++TGRS+G C+V F
Sbjct: 159 KLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEF 218
Query: 613 EDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 708
D E + G + G +++ + +R
Sbjct: 219 WDEESVPLGL-ALNGQRLMGAPLQIQRTCAER 249
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/72 (30%), Positives = 40/72 (55%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
E+ I IF +G ++K+ + +D+ +RGF + F + +DA+ + + E+ GR IR
Sbjct: 285 EKMIRDIFESFGRIEKIDLEVDSNR-ENRGFATITFRNADDAQKSCEQLNNFELAGRCIR 343
Query: 685 VDYSITQRAHTP 720
+ SI Q + P
Sbjct: 344 L--SIKQESQAP 353
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/65 (29%), Positives = 38/65 (58%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
T++++ +F+ G ++ ++V D TG+S G+ FV + EDA A + G+ + + I
Sbjct: 54 TQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTI 113
Query: 682 RVDYS 696
+V Y+
Sbjct: 114 KVSYA 118
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 44.8 bits (101), Expect = 7e-05
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA-KIAKNECTGM 660
GLS TT + + F ++G V++ V+ D T R+RGF F+ F D K+ N
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR--EH 108
Query: 661 EIDGRRIRVDYSITQRAH----TPTPGIYMG 741
E+DG++I + +R T T +++G
Sbjct: 109 ELDGKKIDPKVAFPKRTQAKLVTKTKKVFIG 139
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA-K 633
T ++ + + GLS +T + + F YG V+ ++ D T R RGF FV F+ E A K
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 634 IAKNECTGMEIDGRRI 681
+ E EI+G+ +
Sbjct: 191 VC--EIHFHEINGKMV 204
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/72 (25%), Positives = 40/72 (55%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
TE ++ FS+YG + + + +D +TG +G+ V +E ++A A ++ ++ G+ +
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNV 126
Query: 682 RVDYSITQRAHT 717
+VD+ + T
Sbjct: 127 KVDWCFVKGKKT 138
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 44.8 bits (101), Expect = 7e-05
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Frame = +1
Query: 484 GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA-KIAKNECTGM 660
GLS TT + + F ++G V++ V+ D T R+RGF F+ F D K+ N
Sbjct: 51 GLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNR--EH 108
Query: 661 EIDGRRIRVDYSITQRAH----TPTPGIYMG 741
E+DG++I + +R T T +++G
Sbjct: 109 ELDGKKIDPKVAFPKRTQAKLVTKTKKVFIG 139
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA-K 633
T ++ + + GLS +T + + F YG V+ ++ D T R RGF FV F+ E A K
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 634 IAKNECTGMEIDGRRI 681
+ E EI+G+ +
Sbjct: 191 VC--EIHFHEINGKMV 204
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 618
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FV F +
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78
Query: 634 IAKNECTGMEIDGRRI 681
A + + IDG+ +
Sbjct: 79 AAMKQRPHI-IDGKTV 93
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 618
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 618
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 70 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 618
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FV F +
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78
Query: 634 IAKNECTGMEIDGRRI 681
A + + IDG+ +
Sbjct: 79 AAMKQRPHI-IDGKTV 93
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFED 618
E+ ++ L V G+ TE + F+KYG V K ++++D T + RGF FV F+D
Sbjct: 108 ESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
P R + V GL+ TT+ + +S++G + + V+ D T RSRGF FV F +
Sbjct: 19 PENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVD 78
Query: 634 IAKNECTGMEIDGRRI 681
A + + IDG+ +
Sbjct: 79 AAMKQRPHI-IDGKTV 93
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
V G+S + ++ F++YG V + QV D GRSRGF FV F E K+A
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V GL +EQ + F ++G VD ++ D +T R F F+ FE+ E A A ++ T
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ-TK 172
Query: 658 MEIDGRRIRVDYSITQRAHTP 720
R V ++ Q P
Sbjct: 173 QTFGTRECDVKKAVPQGKRFP 193
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 639
V G+S + ++ F++YG V + QV D GRSRGF FV F E K+A
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLA 86
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/81 (29%), Positives = 37/81 (45%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V GL +EQ + F ++G VD ++ D +T R F F+ FE+ E A A ++ T
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQ-TK 172
Query: 658 MEIDGRRIRVDYSITQRAHTP 720
R V ++ Q P
Sbjct: 173 QTFGTRECDVKKAVPQGKRFP 193
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 666
L+ +E+ I H F YG + V + GF FV F+D DA+ A ++ G E+
Sbjct: 10 LTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 667 DGRRIRVDYS 696
G R+ +DYS
Sbjct: 62 GGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 666
L+ +E+ I H F YG + V + GF FV F+D DA+ A ++ G E+
Sbjct: 10 LTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 667 DGRRIRVDYS 696
G R+ +DYS
Sbjct: 62 GGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 666
L+ +E+ I H F YG + V + GF FV F+D DA+ A ++ G E+
Sbjct: 10 LTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 667 DGRRIRVDYS 696
G R+ +DYS
Sbjct: 62 GGERVILDYS 71
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +1
Query: 499 TTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 678
T + Q+ H F +YG + V + D TG RGF + F+ + A A + + IDG R
Sbjct: 36 TGKSQLEHYFKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHV-IDGDR 94
Query: 679 IRVD 690
+ V+
Sbjct: 95 VDVE 98
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
+++ + F KY K +VV +++T +S+G+ FV F D ED A E G + R I
Sbjct: 215 SDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPI 274
Query: 682 RV 687
++
Sbjct: 275 KL 276
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 454 PTPSRCLGVF--GLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMED 627
P SR VF L ++ F K+G V + +++ D T + +G+ FV + ED
Sbjct: 126 PETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRED 185
Query: 628 AKIAKNECTGMEIDGRRIRVDYS 696
A+ A +E G + R IR +++
Sbjct: 186 AERAIDEMNGAWLGRRTIRTNWA 208
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/70 (28%), Positives = 40/70 (57%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 666
LS + + + F+K+G V + +V+ D +T +S+G+ FV F + ++A+ A G I
Sbjct: 142 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWI 201
Query: 667 DGRRIRVDYS 696
R +R +++
Sbjct: 202 GKRAVRTNWA 211
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V +S TT+ + +FS YG + +V++ KT R + FV +E E A A E G
Sbjct: 241 VGNISQQTTDADLRDLFSTYGDIAEVRIF---KTQR---YAFVRYEKKECATKAIMEMNG 294
Query: 658 MEIDGRRIRVDYSITQ 705
E+ G ++R + TQ
Sbjct: 295 KEMAGNQVRCSWGRTQ 310
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEID-GRRI 681
E + +F K G + +++++D +G SRG+ FV + + EDA A G EI G+ +
Sbjct: 213 EDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPL 272
Query: 682 RVDYSI 699
+V+ SI
Sbjct: 273 KVNVSI 278
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDG 672
TE+++N +F +Y +D+V+ V D + F++F + +D A E G E++G
Sbjct: 389 TEEKLNELFKEYASLDRVKKVKD--------YAFIHFNERDDCLKAMEEWNGKELEG 437
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 457 TPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGR-SRGFCFVYFEDMEDAK 633
+P++ + + LS + + IFS YG + V + D RG+ +V ++++EDA+
Sbjct: 130 SPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAE 189
Query: 634 IAKNECTGMEIDGRRIRVDYSITQRA 711
+ G +IDG + V+ +I +++
Sbjct: 190 KSIKHMDGGQIDGMAVHVEMTIGRQS 215
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFS-KYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECT 654
V L TE + FS + GPV+ V++V D TG+ +GF FV F+ +A + T
Sbjct: 250 VGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALSMET 309
Query: 655 GMEIDGRRIRVDYSITQRAH 714
++++ R +R+ + ++ H
Sbjct: 310 -IKMEKRDLRIT-KVMKKGH 327
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/99 (26%), Positives = 46/99 (46%)
Frame = +1
Query: 427 GDRVRLLENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFV 606
GD+ P S L + GL T + + + SKYG + + ++D T +G+ FV
Sbjct: 68 GDQQHHDSTPLSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFV 127
Query: 607 YFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPT 723
FE + A A + G+ +G + ++ + Q+ PT
Sbjct: 128 DFESPQAAAAAVD---GLNTEGVQAQM-AKLQQQEQDPT 162
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
E ++ +F K G V ++ + D TG +GF FV FE +DA A E + + ++
Sbjct: 189 EDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLK 248
Query: 685 VDYS 696
V+++
Sbjct: 249 VEWT 252
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
FS +G + +V++D + GRS+GF FV FE E+A A + I + + V
Sbjct: 363 FSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
FS +G + +V D + G S+G+ FV+FE A+ A + GM + +++ V
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
FS +G + +V++D + GRS+GF FV FE E+A A + I + + V
Sbjct: 363 FSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
FS +G + +V D + G S+G+ FV+FE A+ A + GM + +++ V
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 37.1 bits (82), Expect = 0.014
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +1
Query: 448 ENPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE-DME 624
E+ T + + + LS T E+ I SK+G +D + +G S+G FV+F +E
Sbjct: 257 ESITEGKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIE 316
Query: 625 DAKIAKNECTGMEIDGRRIRVDYSITQR 708
+ + G+ ID R ++ + +I ++
Sbjct: 317 ASNCIEGVEDGVIIDNRLVKANLAIPRK 344
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
+ I FS +G + +V ID + G S+G+ FV+FE E A+ A + GM + G+++ V
Sbjct: 134 KSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 648
F YG + +V+ D + GRS+GF FV FE E+A A E
Sbjct: 337 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTE 376
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
++ + +F+K+G + +V+ G+S+GF FV F + E+A+ A I+G ++
Sbjct: 226 KETLEKVFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLK 283
Query: 685 VDYSITQR 708
+ Q+
Sbjct: 284 LHVCRAQK 291
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
+ I FS +G + +V ID + G S+G+ FV+FE E A+ A + GM + G+++ V
Sbjct: 71 KSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
Score = 35.9 bits (79), Expect = 0.031
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 705
F YG + +V+ D + GRS+GF FV FE E+A A E + + + V +I Q
Sbjct: 274 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV--AIAQ 330
Query: 706 R 708
R
Sbjct: 331 R 331
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
++ + +F+K+G + +V+ G+S+GF FV F + E+A+ A I+G ++
Sbjct: 163 KETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLK 220
Query: 685 VDYSITQR 708
+ Q+
Sbjct: 221 LHVCRAQK 228
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 508 QQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
+ I FS +G + +V ID + G S+G+ FV+FE E A+ A + GM + G+++ V
Sbjct: 134 KSIYDTFSLFGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 35.9 bits (79), Expect = 0.031
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 705
F YG + +V+ D + GRS+GF FV FE E+A A E + + + V +I Q
Sbjct: 337 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV--AIAQ 393
Query: 706 R 708
R
Sbjct: 394 R 394
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
++ + +F+K+G + +V+ G+S+GF FV F + E+A+ A I+G ++
Sbjct: 226 KETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLK 283
Query: 685 VDYSITQR 708
+ Q+
Sbjct: 284 LHVCRAQK 291
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 35.9 bits (79), Expect = 0.031
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 526 FSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 705
F YG + +V+ D + GRS+GF FV FE E+A A E + + + V +I Q
Sbjct: 277 FESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV--AIAQ 333
Query: 706 R 708
R
Sbjct: 334 R 334
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIR 684
++ + +F+K+G + +V+ G+S+GF FV F + E+A+ A I+G ++
Sbjct: 166 KETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLK 223
Query: 685 VDYSITQR 708
+ Q+
Sbjct: 224 LHVCRAQK 231
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKV-QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
E+ + FS +G + +V +++ D +G S+GF F+ F E + A G + R I
Sbjct: 113 EKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAI 172
Query: 682 RVDYS 696
V Y+
Sbjct: 173 TVSYA 177
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V GL +E + + + GPV V + D T +GF FV F EDA A
Sbjct: 17 VGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNM 76
Query: 658 MEIDGRRIRVD 690
+++ G+ I+V+
Sbjct: 77 IKLYGKPIKVN 87
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKV-QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
E+ + FS +G + +V +++ D +G S+GF F+ F E + A G + R I
Sbjct: 123 EKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAI 182
Query: 682 RVDYS 696
V Y+
Sbjct: 183 TVSYA 187
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +1
Query: 478 VFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 657
V GL +E + + + GPV V + D T +GF FV F EDA A
Sbjct: 27 VGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNM 86
Query: 658 MEIDGRRIRVD 690
+++ G+ I+V+
Sbjct: 87 IKLYGKPIKVN 97
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
E +F KYG V ++ D T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
E +F KYG V ++ D T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
E +F KYG V ++ D T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
E +F KYG V ++ D T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
E +F KYG V ++ D T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
E +F KYG V ++ D T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 34.7 bits (76), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 505 EQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
E +F KYG V ++ D T S+G CFV F +DA
Sbjct: 68 ETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDA 109
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 681
+++ + H F YG + V + GF FV F+D DA A ++ G E+ G R+
Sbjct: 14 SDRDVEHFFRGYGKLSDVIM--------KNGFGFVDFQDQRDADDAVHDLNGKELCGERV 65
Query: 682 RVDY 693
+++
Sbjct: 66 ILEF 69
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 33.5 bits (73), Expect = 0.17
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
NP PS + V L TE + S +GPV + ++ V FED+E A
Sbjct: 27 NPNPSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSR------MALVEFEDIEGA 80
Query: 631 KIAKNECTGMEID--GRRIRVDYSITQ 705
K N T +I+ G+ +YS +Q
Sbjct: 81 KACVNFATSNQINVGGQGALFNYSTSQ 107
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 33.5 bits (73), Expect = 0.17
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 451 NPTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDA 630
NP PS + V L TE + S +GPV + ++ V FED+E A
Sbjct: 27 NPNPSIVVHVRNLHQKVTEADLLEALSNFGPVAYATCIPHSR------MALVEFEDIEGA 80
Query: 631 KIAKNECTGMEID--GRRIRVDYSITQ 705
K N T +I+ G+ +YS +Q
Sbjct: 81 KACVNFATSNQINVGGQGALFNYSTSQ 107
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 502 TEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
T+ ++ +FSK+G V V+ V K G+ +G FV F+ A+
Sbjct: 695 TDDELKALFSKFGTVTSVRRVTH-KDGKPKGIAFVDFDTEASAQ 737
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 466 RC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 642
RC L V L E ++ +FS +G + + + +GF F+ + A+ AK
Sbjct: 115 RCRLFVGNLPNEVKETELKELFSPHGDIAECYL-------SGKGFAFLRLDTRAHAESAK 167
Query: 643 NECTGMEIDGRRIRVDYSI 699
G I GR++RV +++
Sbjct: 168 EAIDGRIIHGRQVRVRFAV 186
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 615
LS + + + H FS +G V++ ++D K GR G V FE
Sbjct: 196 LSPTVSNEMLYHAFSHFGDVERAVHIVDEK-GRPTGEGIVEFE 237
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 466 RC-LGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAK 642
RC L V L E ++ +FS +G + + + +GF F+ + A+ AK
Sbjct: 115 RCRLFVGNLPNEVKETELKELFSPHGDIAECYL-------SGKGFAFLRLDTRAHAESAK 167
Query: 643 NECTGMEIDGRRIRVDYSI 699
G I GR++RV +++
Sbjct: 168 EAIDGRIIHGRQVRVRFAV 186
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 487 LSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFE 615
LS + + + H FS +G V++ ++D K GR G V FE
Sbjct: 196 LSPTVSNEMLYHAFSHFGDVERAVHIVDEK-GRPTGEGIVEFE 237
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 592 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
GF FV FED DA+ A ++ G ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 592 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
GF FV FED DA+ A ++ G ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 592 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 687
GF FV FED DA+ A ++ G ++G +R+
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRL 67
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 454 PTPSRCLGVFGLSLYTTEQQINHIFSKYGPVDKVQVVIDAKTGRSRGFCFVYFEDMEDAK 633
P +R + + L T Q + +G VD V ++ G +R + F +DA+
Sbjct: 381 PQATRVIIIRNLPSDYTWQIVRDRVRNFGEVDSVDMMAP---GAAR----IRFATFQDAE 433
Query: 634 IAKNECTGMEIDGRRIRVDYS 696
A+ G ++GR I VDY+
Sbjct: 434 RARAALYGSTVEGRMISVDYA 454
>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical
protein F59A6.5 protein.
Length = 1286
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 176 SREPLRVLERLLSRSDIAMFVVNK--RDKSEISRIFSINTLKRSTSIYRRDRTLKTQIEK 3
SR L VLE+ LS +F+V K DK+E F + + + + R + L+ ++EK
Sbjct: 154 SRSRLHVLEKELSAKANDIFMVTKDLHDKNEELTSFRMEYVTKLSEANREKKALEEKLEK 213
>AC084154-12|AAK29876.1| 1137|Caenorhabditis elegans Hypothetical
protein Y22D7AR.12 protein.
Length = 1137
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 550 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 648
K V++ GRSR CF Y E + +AKN+
Sbjct: 982 KTPVIVHCYDGRSRSACFAYME-LACQMVAKND 1013
>Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical
protein F09F3.2 protein.
Length = 323
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 642 LCNLSIFHVLKVNEAKPSGTARLC 571
+CNL +F+ +KPSG +LC
Sbjct: 33 ICNLYLFYKFVTRASKPSGFQKLC 56
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,998,418
Number of Sequences: 27780
Number of extensions: 327058
Number of successful extensions: 959
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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