Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_O03
         (322 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83240-1|CAB05815.2|  373|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AY204178-1|AAO39182.1|  373|Caenorhabditis elegans nuclear recep...    27   4.0  
AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical...    27   4.0  
Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical pr...    26   5.3  
Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    26   7.0  

>Z83240-1|CAB05815.2|  373|Caenorhabditis elegans Hypothetical
           protein T23H4.2 protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 57  RNFH*KCRFVQXTDVTVHRKNTSK 128
           + +H +CRF Q  DVT +++N  +
Sbjct: 36  KRYHYQCRFEQNCDVTKNKRNACR 59


>AY204178-1|AAO39182.1|  373|Caenorhabditis elegans nuclear receptor
           NHR-69 protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 57  RNFH*KCRFVQXTDVTVHRKNTSK 128
           + +H +CRF Q  DVT +++N  +
Sbjct: 36  KRYHYQCRFEQNCDVTKNKRNACR 59


>AC087079-15|ABF71716.1|  152|Caenorhabditis elegans Hypothetical
           protein Y37E3.19 protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 104 STSEKHKQASNDTFHGFPPIIEATIVQKTI 193
           S +E   Q  N+TFH  PP I+  +  +++
Sbjct: 42  SQAENRPQGGNETFHFTPPHIKTAVPTRSL 71


>Z50741-1|CAA90609.1|  395|Caenorhabditis elegans Hypothetical
           protein F55G7.1 protein.
          Length = 395

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 136 RHISRVSSYHRSDNCSENNCSCYKATE 216
           +H+S   S+H+S N +++   CY  ++
Sbjct: 69  QHVSNAQSFHQSPNSNDSFSLCYTLSD 95


>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 219 YFSSLVTTAIVF*TIVASMIGG 154
           ++S L+TT I+   IVA +IGG
Sbjct: 608 FYSILITTFIIAFAIVAGLIGG 629


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,651,834
Number of Sequences: 27780
Number of extensions: 69209
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)