Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N22
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0531 + 23707978-23709021                                         31   0.77 
02_04_0553 - 23808328-23809530                                         30   1.3  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     30   1.3  
02_04_0534 + 23725051-23726253                                         29   3.1  
03_04_0197 + 18375497-18375943,18376666-18377052,18377166-183774...    28   5.4  
01_06_1063 + 34194853-34195671                                         28   7.1  

>02_04_0531 + 23707978-23709021
          Length = 347

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 18  PPRSPRTPHSNVAVLPVQEPVP 83
           PP SPRTPH+ V  LPV   +P
Sbjct: 36  PPDSPRTPHTYVGFLPVFGDLP 57


>02_04_0553 - 23808328-23809530
          Length = 400

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 18  PPRSPRTPHSNVAVLPVQEPVP 83
           PP SPRTPH+  ++LPV   +P
Sbjct: 72  PPDSPRTPHTYGSLLPVYGDLP 93


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 18  PPRSPRTPHSNVAVLPVQEPVP 83
           PP SPRTPH+  ++LPV   +P
Sbjct: 72  PPDSPRTPHTYGSLLPVYGDLP 93


>02_04_0534 + 23725051-23726253
          Length = 400

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 18  PPRSPRTPHSNVAVLPVQEPVP 83
           PP SPRTPH+  + LP+   +P
Sbjct: 73  PPDSPRTPHTYGSFLPIYGDLP 94


>03_04_0197 +
           18375497-18375943,18376666-18377052,18377166-18377410,
           18377651-18378221
          Length = 549

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 114 RTGRSRSLSHSALVLGPAAQRRWNVESAATGAALIG 7
           R G +  ++HS    G     RW VESAA  AAL G
Sbjct: 90  RAGAAGVVAHSGAA-GARGWGRWGVESAAAAAALGG 124


>01_06_1063 + 34194853-34195671
          Length = 272

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 18 PPRSPRTPHSNVAVLPVQEPVPS 86
          PP +PRTP    A  P Q P PS
Sbjct: 6  PPPTPRTPLGGAATTPDQLPPPS 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,148
Number of Sequences: 37544
Number of extensions: 211176
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)