Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N19
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    33   0.030
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   0.64 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   2.0  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   3.4  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   3.4  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   6.0  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.9  

>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 33.1 bits (72), Expect = 0.030
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 78  HFHDTYGQGLSNLLAGLEFGIKTVDSSISGLG 173
           HFH+  G  ++N    LE G   +D+SI G+G
Sbjct: 224 HFHNDTGMAIANAYCALEAGATHIDTSILGIG 255


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 201 GNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGK 317
           G     DLVY L  L +  +  LV+++ A R ++N+L K
Sbjct: 382 GRDEAHDLVYRLCHLSIQENKPLVELLLAERQVTNYLSK 420


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 21/93 (22%), Positives = 37/93 (39%)
 Frame = -1

Query: 517  LRYKSKYLLSCVWNKYLITIIECLFLSLNRYCNINYLYEQLQDASLTIXXXXXXXXXXXX 338
            ++YK K L+S +WN  +I++     LS++    + Y     ++   T+            
Sbjct: 807  IKYKPKILISQIWNAIVISMYREHLLSIDHVQRLLYHQVPAEEGRRTLRTPTFFVSQDDN 866

Query: 337  XXLDSVGFPRKLEMYRPASIIFTRSTSVLTPRP 239
                +  FP   E  R  S  F +S +   P P
Sbjct: 867  IVHTTF-FPANSEAERRLS-FFAQSLATPIPEP 897


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 175 PPSPEMEESTVLIPNSRPASK 113
           PPSP+++ S  + P S+P S+
Sbjct: 165 PPSPKVDTSNTVSPGSKPISE 185


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 481 WNKYLITIIECLFLSLN-RYCNINYLYEQLQDA 386
           + +  + +I   F+S +  YC I YLY  L DA
Sbjct: 35  FTRVFLVLISLYFMSWHPNYCTIVYLYSSLLDA 67


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 166 PEMEESTVLIPNSRPASKLESP 101
           PEM+  +   P++RPAS  E+P
Sbjct: 101 PEMKVGSPYTPSTRPASHTEAP 122


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 310 RKLEMYRPASIIFTRSTSVLTPRPYRK*TRSSVARLPLAPRAYGHPPSPEMEEST 146
           RKL + R AS++     ++  P  YR  +     R PL   +   P S E E  T
Sbjct: 304 RKLGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDT 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,794
Number of Sequences: 5004
Number of extensions: 46856
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)