Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N19
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical...   122   2e-28
AC026301-4|AAK68895.1|  347|Caenorhabditis elegans Hypothetical ...    31   0.44 
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    29   3.1  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical
           protein Y71G12B.10 protein.
          Length = 318

 Score =  122 bits (293), Expect = 2e-28
 Identities = 56/110 (50%), Positives = 78/110 (70%)
 Frame = +3

Query: 6   GRSGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLGGCPY 185
           G   +V ++L  +L     E+LA+HFHDTYGQ L+N+L  +E GI++ DSSI+GLGGCPY
Sbjct: 196 GTVKTVSKMLDTVLKSVPAEKLAVHFHDTYGQALANVLISIEKGIRSADSSIAGLGGCPY 255

Query: 186 ARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPTESKV 335
           A+GA+GNLATEDL+YFL G G  T V+L K++E  ++ +   G    S+V
Sbjct: 256 AKGATGNLATEDLLYFLKGNGFETGVNLDKVVETAKWFNEAAGYDKWSRV 305


>AC026301-4|AAK68895.1|  347|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.4 protein.
          Length = 347

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 383 FDNISVISKSITNDPVNFGFGRFSKEVGNVSTCFYNLY 270
           F+  SVIS    N P+NF   R  K   ++S  F+N +
Sbjct: 278 FEVASVISDKAPNYPLNFSVRRLQKSYNSLSLLFFNFF 315


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 156 SISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNF-LGKPTESK 332
           S  G GG   A GA   + T      +   G +TD+DLVKI +A   I +  L + ++S 
Sbjct: 229 STLGGGGGAAAAGAKSGIMTPGWKSDIPSSGTSTDLDLVKIGQARNKIMDMQLTQVSDSV 288

Query: 333 VNRVISD 353
             + + D
Sbjct: 289 TGQTVVD 295


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -1

Query: 223 RSSVARLPLAPRAYGHPPSPEMEESTVLIPNSRPASKLESP 101
           + S  ++P  P    HPP P+ ++    +P   P S+  +P
Sbjct: 217 KPSGTKMPAQPPPQQHPPPPQPQQIMSPMPPQAPPSQQATP 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,783
Number of Sequences: 27780
Number of extensions: 257735
Number of successful extensions: 705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)