Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_N18
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 31 0.29
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 30 0.50
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 29 0.88
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 1.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 28 2.0
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.7
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 27 4.7
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 8.2
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 26 8.2
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 8.2
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 30.7 bits (66), Expect = 0.29
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +3
Query: 435 ENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSSF 614
EN+S+ T+ QP Q + S M+ TTE+ E S Q+ S N R R + SS
Sbjct: 2208 ENESKE-EETR-QPEVNIQPEEPINTSDMEGVTTEANEIGSYQEPSLINIRGREVDVSSL 2265
Query: 615 ASDVSFRL 638
D +F L
Sbjct: 2266 GIDPTFLL 2273
Score = 26.6 bits (56), Expect = 4.7
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +3
Query: 429 IGENDSQTFHSTKSQPSTVSQSNTFRD----VSPMQTTTTESTEYNSGQDLSQDNERQ 590
+GENDS TF + ++ + S ++ + VSP++ E+ E +S + QD+E Q
Sbjct: 1966 VGENDSTTFEAMENAFTETSDNDDHLEEADHVSPVEIDFLENDENSSSE---QDDEFQ 2020
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 457 IQLNHSHQLSLKVILFEMSRPCKQQQLNQLNTIL 558
I+ N SH+LSL + EM+ P + +++TIL
Sbjct: 1106 IRNNSSHELSLVAFIREMAMPVPNDEFKKISTIL 1139
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.1 bits (62), Expect = 0.88
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = +3
Query: 462 TKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSSFASDVSFRLP 641
T S + +SQS V + + + S + D E+ R S D S +LP
Sbjct: 257 TGSSSALLSQSEFLGSVPSLSDSIATVDPFFSFESFETD-EKAR-----SLLMDASLKLP 310
Query: 642 SYDTPMMYHLQSDIEVSASEAEERGLNGST 731
+ TP + S + + ++ AE G+ GST
Sbjct: 311 QFSTPNLSSNSSSLSLKSTLAE--GMKGST 338
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 1.5
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Frame = +3
Query: 405 ITNSDLFSIGENDSQTFHSTKSQPSTVS----QSNTFRDVSPMQTTTTESTEYNSGQDLS 572
+ +S L + TF+ TKS S+V S++F +P+ T++ ++ S QD +
Sbjct: 237 LESSSLTNTVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDST 296
Query: 573 QDNERQRRLSNSSF----ASDVSFRLPSYDT--PMMY--HLQSDIEV 689
+ ++ S+ +S ++ PS + P Y L +++EV
Sbjct: 297 TIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEV 343
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 474 PSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSS 611
PST SNT +D + S ++S S DN+ QR +++S
Sbjct: 798 PSTFFSSNTKKDNIEEENLEPHSFSFDSTLASSSDNDEQRDFASNS 843
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.7
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +3
Query: 426 SIGENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSN 605
SI NDS F + Q ++ +P T+TE+ YN S RQ ++
Sbjct: 242 SIYSNDS--FQDPRVQANSPLTIQRISSAAPSTPTSTENVNYNMTTPSSPSYSRQTGPAS 299
Query: 606 SSFASDVSFRLPSYDTPM--MYHLQS---DIEVSASEAEERGLN 722
+ ++ + TP+ M Q D+++S + + + LN
Sbjct: 300 ETINDEIDSPNFFFPTPLNIMTTTQDSSRDVQLSLNNVQSQALN 343
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/83 (22%), Positives = 32/83 (38%)
Frame = +3
Query: 408 TNSDLFSIGENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNER 587
T+S + N + T + T S S + TT T ST ++ + +
Sbjct: 610 TSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSST 669
Query: 588 QRRLSNSSFASDVSFRLPSYDTP 656
+SSF S+V+ + TP
Sbjct: 670 SFASESSSFYSNVTTSSSTVSTP 692
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 411 NSDLFSIGENDSQTFHSTKSQPSTVS-QSNTFRDVSPMQTTTTESTEYNSGQDLSQDNER 587
++D + N++ K PST S Q + S + T T STE G+D+ +
Sbjct: 138 DADKYGFIFNENSVPRVLKKAPSTHSPQLSVPSKTSTIDKTDTRSTEKTKGKDIFSNARN 197
Query: 588 QRRLSNSS 611
Q+ NSS
Sbjct: 198 QK--GNSS 203
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +3
Query: 432 GENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSN 605
G+N Q ++T+++ + F D P + ++ DL NE Q SN
Sbjct: 88 GQNHCQKQNTTQTKTTISGSEQLFNDEKPKKIIYSKGGNDGKEDDLQNVNEPQDAYSN 145
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 618 SQKNC*TVSFDAHYLDLSLVQNCIQLIQLLLFAWARHLEKYYFERQLMAVI 466
S KN SF ++ ++ + + + LLL + ++KYY E +L +
Sbjct: 836 SSKNLSKNSFMTSRVNWAIQSSAVDYLHLLLVSMNHLIKKYYLEARLSLTV 886
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 411 NSDLFSIGENDSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLS 572
NS+L D F ++ SQ + SQ + +SP+ T S ++ D+S
Sbjct: 135 NSELDLSNFQDDLDFENSISQKNEFSQKSPSVPLSPVSTFPASSISLDASSDVS 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,297
Number of Sequences: 5004
Number of extensions: 57246
Number of successful extensions: 192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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