Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N18
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0003 - 14989160-14989445,14989673-14989807,14991418-149915...    38   0.011
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471...    30   2.8  
08_02_1132 - 24530921-24532906                                         29   3.7  
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665...    28   8.6  

>01_04_0003 -
           14989160-14989445,14989673-14989807,14991418-14991508,
           14991571-14991712,14991924-14992403,14992610-14993548
          Length = 690

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = +3

Query: 468 SQPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDLSQDNERQRRLSNSSFASD-----VSF 632
           +QP+ + +SN   D S  Q  TT+S  Y     L+++  R  +L+NS    D      + 
Sbjct: 137 AQPTELHESNGNNDTSNFQEETTQSDTYLGDAMLNENGSRDYQLNNSGADDDEIPNSPAL 196

Query: 633 RLPSYDTPMMYHLQSDIEVSASEAEERGLNGS 728
            +   DT  ++    D +  A + +  G N S
Sbjct: 197 EMEDVDTRALHETSHDEKYEAEDDQMNGRNSS 228


>11_06_0277 +
           21843658-21845220,21846533-21846718,21847037-21847165,
           21847256-21847415,21847846-21847955,21848038-21848247,
           21848473-21848730,21848810-21848885,21849217-21849350,
           21849928-21850007,21850265-21850316
          Length = 985

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 441 DSQTFHSTKSQPSTVSQSNTFRDVSPMQTTTTESTEYNSG 560
           DS   H         + S +F D S + T  TEST +NSG
Sbjct: 658 DSDLDHQISRTEEFENSSLSFSDSSDLSTLETESTSFNSG 697


>08_02_1132 - 24530921-24532906
          Length = 661

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 153 NSQILTKQKNRDLLNLTLYEDNSNVMRFT 67
           N   L KQ+ RDL  + +  DN  VMRFT
Sbjct: 117 NDAKLLKQRTRDLYQVNMMLDNLPVMRFT 145


>07_02_0028 +
           11964941-11964991,11965259-11966101,11966249-11966560,
           11966640-11967073,11967500-11967941
          Length = 693

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 471 QPSTVSQSNTFRDVSPMQTTTTESTEYNSGQDL 569
           QP+++  ++ F DV P  T ++   + NSG+D+
Sbjct: 386 QPASMYMTDLFPDVVPQTTESSPPRQSNSGKDI 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,928
Number of Sequences: 37544
Number of extensions: 298781
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)