Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N17
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-8|AAN63414.1|  186|Caenorhabditis elegans Boca/mesd chape...   104   5e-23
Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated p...    28   7.5  
AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.     28   7.5  

>U37429-8|AAN63414.1|  186|Caenorhabditis elegans Boca/mesd
           chaperone for ywtd beta-propeller-egf protein 1 protein.
          Length = 186

 Score =  104 bits (250), Expect = 5e-23
 Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 9/129 (6%)
 Frame = +3

Query: 204 KKDIRDFSDADMERLLDQWXXXXXXXXXXXXXX-HLRKPPALDLTKMDMS--NPEAVLQA 374
           KKD+  ++DA++E+L ++W               H RKPP LDL  M     +PE +L  
Sbjct: 24  KKDLSSYTDAELEKLYEEWEENDEDELEEDEKPEHKRKPPQLDLESMKAKAKDPEDLLMM 83

Query: 375 TKKGQTLMMFVSVAN--KPSRAR----TEEITKIWQTSLWSNHIQAERYLIDDDRAIFMF 536
           +KKGQTLM+FV V +  +P R+     TE+ T+IWQ+ L++NH+  + ++IDD+RAIFMF
Sbjct: 84  SKKGQTLMLFVGVVDPSQPDRSDIRPFTEKWTQIWQSQLYNNHVDLQVFVIDDNRAIFMF 143

Query: 537 KDGSQAWTA 563
           K+G QA+ A
Sbjct: 144 KNGEQAFEA 152


>Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical
           protein C41G7.3 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 180 AAQKPDWAKKDIRDFSDADM 239
           A +KP+WA KD+R +S  D+
Sbjct: 424 ALKKPNWAPKDVRVYSAVDL 443


>U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated
           protein 97 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 458 YLSNFFCS-CSRRFVGHRHKHHQSLAF 381
           ++ +F CS C + F+GHRH   + L +
Sbjct: 225 HVEHFVCSVCEKPFLGHRHYERKGLPY 251


>AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 458 YLSNFFCS-CSRRFVGHRHKHHQSLAF 381
           ++ +F CS C + F+GHRH   + L +
Sbjct: 225 HVEHFVCSVCEKPFLGHRHYERKGLPY 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,265
Number of Sequences: 27780
Number of extensions: 240315
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)