Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N17
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.53 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 621 YPGKKPDIKNKALRDELXNNYNKI 692
           +PG   + + K L D+L +NYN++
Sbjct: 12  FPGASANSEAKRLYDDLLSNYNRL 35


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 399 MFVSVANKPSRARTEEITKIW 461
           M VSV +KPS    +  T++W
Sbjct: 402 MTVSVTSKPSTMERQTQTEVW 422


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 651 KALRDELXNNYNKI 692
           K L D+L +NYNK+
Sbjct: 30  KRLYDDLLSNYNKL 43


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 651 KALRDELXNNYNKI 692
           K L D+L +NYNK+
Sbjct: 30  KRLYDDLLSNYNKL 43


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 651 KALRDELXNNYNKI 692
           K L D+L +NYNK+
Sbjct: 26  KRLYDDLLSNYNKL 39


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 252 LEAFPYQHQKSLVY 211
           +EAF Y H ++++Y
Sbjct: 476 VEAFDYLHSRNIIY 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,112
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)