Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N09
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    28   0.80 
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   5.6  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   7.4  
SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    25   7.4  

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 236 SIPIAFFYPFILVTAFTVL*YFIDCYFSNTFLLLMFV 346
           S P+A F+ F+L     ++ Y +  +F+++F+LL  V
Sbjct: 46  SHPVALFF-FLLFRTGAIVAYILGMFFTSSFMLLFIV 81


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 102 SNKVNNVILLHNISCFLLADCFNLFILG 19
           S+ VN+V  LHN   + L  CF+ F+ G
Sbjct: 798 SDLVNSVSYLHNSMEWFLQRCFSRFMNG 825


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 226 IVFKHSYCIFLSFYSCDCFYSIVIFH*LLFFEYIFIVDVCRYFNKFLKM 372
           +V KHS    LSF+    F SI     +LF  Y  ++    +F K+L +
Sbjct: 1   MVLKHSVTYNLSFFISFTFSSIFFSSLILFLVYKSVLSKL-FFIKYLML 48


>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 304 NEILQYCKSSHKNKRIEKCNRN 239
           N +LQ C + H ++ ++ C RN
Sbjct: 106 NRLLQSCITKHVDRLLDLCKRN 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,585
Number of Sequences: 5004
Number of extensions: 22138
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)