Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N08
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   0.98 
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   2.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   3.0  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    26   3.0  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   4.0  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.2  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   6.9  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   6.9  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.5 bits (58), Expect = 0.98
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 8    PMISLYSLAVEFRKISIYFWRIKVNKNINKMSAWRQAGL---TYINYSNI 148
            P+I   +  + F+K   +F+++++NK I K   W++  L   + I+ SNI
Sbjct: 1069 PLICALATMLAFQK---FFYQVRLNKGIEKKQEWKEKLLGPFSRISQSNI 1115


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  ISIYFWRIKVNKNINKMSAWRQAGLT 127
           ++ Y  +I + K I+ +  WRQ GLT
Sbjct: 271 VNSYHEQITLKKQISDLQEWRQMGLT 296


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 164  EAPWLRCLSSLCKLNQLASKRSFC 93
            +AP L  LS++C  +  + KR FC
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFC 990


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 355 VIYCTILHKLIVDDFHACWLTIPSSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 179
           +++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 223 QSHTLGQRTTCTPPESCSKVKKE*LTNM-HENHQLLIYV 336
           QSH L    + TP  +   ++ E L+NM H NH +L YV
Sbjct: 270 QSHPLSSVASGTPSANAILLE-ELLSNMLHANHPILDYV 307


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +2

Query: 26  SLAVEFRKISIYFWRIKVNKNINKMSAWRQAGLTYINYSNIAA-KVLRRSLKQEFRAEAL 202
           SL +E   I+++ ++  V   IN  S  R      ++   ++  K  + S  + FR    
Sbjct: 182 SLNLEGSPINLHAYKGTVTSIINDDS--RNINKKTLSKQPVSEHKEKQTSFLRRFRVPGF 239

Query: 203 KRDESHVRVTPWANGRPAHL 262
            RD+   +  P +N  P HL
Sbjct: 240 SRDKDKTKDCPSSNSNPFHL 259


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 211 RISRQSHTLGQRTTCTPPESCSKVKK 288
           ++ ++S     +T  TPP+ CS +KK
Sbjct: 36  QMKKESLAASVKTPSTPPKECSHLKK 61


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 NVTNLTSESHLGPTDDLHTSRKLFQS 281
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 301 WLTIPSSLWNSFLEVCR 251
           WL+IP+S W++F +  +
Sbjct: 507 WLSIPASRWSTFYDASK 523


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,460,101
Number of Sequences: 5004
Number of extensions: 25649
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)