Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_N05
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454... 90 8e-32
05_05_0387 + 24577448-24577638,24580375-24580767,24581078-245812... 98 8e-21
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 97 1e-20
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 32 0.46
09_02_0575 + 10845261-10847057 31 0.80
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 31 1.4
07_03_0510 - 18908224-18908247,18909075-18909347 28 7.4
>11_06_0498 -
24344454-24344660,24344840-24344944,24345324-24345407,
24345523-24345615,24345795-24345920,24347157-24347315,
24347398-24347475,24348316-24348375,24349433-24349555,
24349961-24350041
Length = 371
Score = 90.2 bits (214), Expect(2) = 8e-32
Identities = 46/109 (42%), Positives = 64/109 (58%)
Frame = +1
Query: 469 IDWLMGWQFCDGIGVLGNCKAYAKKSIQYLPPIGWMWKFSEFVFLERSFEKDKEIIKKQI 648
+DW W G LG+ A KKS ++LP IGW F+E++FLERS+ KD++ +K +
Sbjct: 61 VDW---WAGVKRSGCLGSTLAVMKKSSKFLPVIGWSMWFAEYLFLERSWAKDEKTLKWGL 117
Query: 649 SELCDYPDPVWLLLTPEGTRYTKTKHEASVNFAKEKNLPILKXHLTPRT 795
L D+P P WL L EGTR+T K A+ +A + LP + L PRT
Sbjct: 118 QRLKDFPRPFWLALFVEGTRFTPAKLLAAQEYAVSQGLPAPRNVLIPRT 166
Score = 65.3 bits (152), Expect(2) = 8e-32
Identities = 25/60 (41%), Positives = 43/60 (71%)
Frame = +1
Query: 199 IVHLCFAISYFTSGLLLNFVQAILYFGLKPFNKKLYRQINYYLSYSFYSQLVFMAEWWAG 378
+V L + + SGL++N +QA+L+ ++PF+K LYR+IN +L+ + QLV++ +WWAG
Sbjct: 7 LVVLPLGLLFLLSGLIINAIQAVLFLSIRPFSKSLYRRINRFLAELLWLQLVWLVDWWAG 66
>05_05_0387 +
24577448-24577638,24580375-24580767,24581078-24581208,
24581460-24581899
Length = 384
Score = 97.9 bits (233), Expect = 8e-21
Identities = 50/122 (40%), Positives = 68/122 (55%)
Frame = +1
Query: 430 KEHGYLIMNHSYEIDWLMGWQFCDGIGVLGNCKAYAKKSIQYLPPIGWMWKFSEFVFLER 609
KE L NH E+DW+ W G L K KKS+ LP W + EF+ +ER
Sbjct: 101 KERVLLFANHRTEVDWMYLWDLALRKGRLQCIKYILKKSLMKLPIFNWAFHIIEFIPVER 160
Query: 610 SFEKDKEIIKKQISELCDYPDPVWLLLTPEGTRYTKTKHEASVNFAKEKNLPILKXHLTP 789
+E D+ +I+ ++SEL + DP+WL + PEGT YT+ K S +AKE LPIL L P
Sbjct: 161 KWEVDEPLIRSRLSELKNPKDPLWLAVFPEGTDYTEKKCIKSQEYAKEHGLPILNNVLLP 220
Query: 790 RT 795
+T
Sbjct: 221 KT 222
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 97.1 bits (231), Expect = 1e-20
Identities = 50/127 (39%), Positives = 67/127 (52%)
Frame = +1
Query: 415 EKFYGKEHGYLIMNHSYEIDWLMGWQFCDGIGVLGNCKAYAKKSIQYLPPIGWMWKFSEF 594
E K+ L NH E+DW+ W G LG K K S+ LP W + EF
Sbjct: 110 ESVLPKKRVLLFANHRTEVDWMYLWDLALRKGYLGYIKYILKSSLMKLPVFSWAFHIFEF 169
Query: 595 VFLERSFEKDKEIIKKQISELCDYPDPVWLLLTPEGTRYTKTKHEASVNFAKEKNLPILK 774
+ +ER +E D+ II+ ++S D DP+WL + PEGT YT+ K S +A E LPILK
Sbjct: 170 IPVERKWEIDEAIIQNKLSAFKDPRDPLWLAVFPEGTDYTEKKCIKSQEYASEHGLPILK 229
Query: 775 XHLTPRT 795
L P+T
Sbjct: 230 NVLLPKT 236
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 595 VFLERSFEKDKEIIKKQISELCDYPDPVWLLLTPEGT 705
++ R+ KD+E++ K++ + +PD LL+ PEGT
Sbjct: 205 IWFNRNDLKDREVVAKKLRDHVQHPDSNPLLIFPEGT 241
>09_02_0575 + 10845261-10847057
Length = 598
Score = 31.5 bits (68), Expect = 0.80
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -2
Query: 651 RYLLLDNFLIFFKRSF*KYEF*KFPHPANR 562
RYL L+NF I F++++ K++F K P P R
Sbjct: 520 RYLSLENFEIEFRKTYAKHKFFKVPDPKLR 549
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +1
Query: 535 AKKSIQYLPPIGWMWKFSEFVF--LERSFEKDKEIIKKQISELCDYPDPVWL-LLTPEGT 705
A K++++L + + K S F + +K + QISE C Y DP+ L+ P
Sbjct: 692 AVKAMKHLRTLVLIGKHSSLFFQSFKDVVQKGHHLRLLQISETCTYVDPLLCNLVNPAHI 751
Query: 706 RYTKT-KHEASVNFAKEKNLPIL 771
RY K K +F+K +L +L
Sbjct: 752 RYMKLHKRALPQSFSKFYHLQVL 774
>07_03_0510 - 18908224-18908247,18909075-18909347
Length = 98
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 25 VSVRFSGLNSXFHLNH*SNTSTIGNPWLTVLGY 123
VSV FSG HL +T+GN W TV GY
Sbjct: 60 VSVMFSGHLGDVHLAG----ATLGNSWATVTGY 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,229,381
Number of Sequences: 37544
Number of extensions: 364802
Number of successful extensions: 710
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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