Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N04
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541...    29   2.5  
03_01_0057 + 476172-476283,476337-476449,476532-476634,477089-47...    28   4.4  

>01_06_0561 +
           30251547-30252173,30252248-30252405,30253250-30254192,
           30254271-30254438,30254546-30254857,30255498-30255557,
           30255905-30255937,30256083-30256271
          Length = 829

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 2   GRPMSSCFEVTQRTTSAKNVQIHDSIPCFGL 94
           G P+SSC +V +RTT +  V    SI  F L
Sbjct: 428 GNPVSSCHQVVKRTTGSPVVTEGSSIDDFAL 458


>03_01_0057 +
           476172-476283,476337-476449,476532-476634,477089-477210,
           477303-477497,477627-477701,478082-478179,478328-478421
          Length = 303

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 181 TMNPWRLFINLFRMKLKNSCYARSLKPTPPKQKHRQN 291
           TM  W++FI  F +   + C+ + +K +   + H +N
Sbjct: 250 TMKHWQVFILFFELFTASVCFGKRIKHSSISEGHDEN 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,882
Number of Sequences: 37544
Number of extensions: 228177
Number of successful extensions: 598
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)