Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_N03
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    55   7e-08
AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical ...    36   0.034

>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 26/83 (31%), Positives = 44/83 (53%)
 Frame = +1

Query: 79  LPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRKALTGQDV 258
           LP+  V RI+K  +     ++K+A+    +  S F+ ++ S A  I    KRK +T  D+
Sbjct: 66  LPIANVVRIMKTQMDPQAKLAKDAKECAQECVSEFISFIASEAAEICNITKRKTITADDL 125

Query: 259 IDAMKDIEFDRFVEPLGEALEHY 327
           + AM+   FD + EP+   L+ Y
Sbjct: 126 LTAMEATGFDNYAEPMRIFLQKY 148


>AL132949-3|CAB61070.1|  179|Caenorhabditis elegans Hypothetical
           protein Y53F4B.3 protein.
          Length = 179

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 25/81 (30%), Positives = 43/81 (53%)
 Frame = +1

Query: 58  EKLEDLNLPLTVVTRIVKEALPSGVSISKEARTGLAKAASVFVLYVTSAATNIVKNKKRK 237
           E+L    LPL  V ++V+   P    ++ EA   +AKAA +F+  +++AA      +KRK
Sbjct: 29  EELVRSQLPLGRVKKVVRMN-PDVEMLNNEALQLMAKAAELFIKELSNAANQNAALEKRK 87

Query: 238 ALTGQDVIDAMKDIEFDRFVE 300
            +  +D+  A+K      F+E
Sbjct: 88  TVQTKDIDKAIKKTWAFAFLE 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,229,002
Number of Sequences: 27780
Number of extensions: 291105
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)