Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_M24
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.51
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.6
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 3.6
07_03_1191 + 24690936-24691029,24691184-24691377 29 3.6
03_06_0422 + 33818887-33819996 29 3.6
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 3.6
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 6.3
10_08_0886 + 21307977-21308007,21308113-21308240 28 6.3
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 6.3
08_02_1172 + 24898290-24899141,24900864-24901328 28 8.3
02_01_0775 + 5775949-5777385 28 8.3
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 115 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 243
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 115 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 216
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 292 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 122
S +N+++ RCG HC L + L + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 115 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 225
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>03_06_0422 + 33818887-33819996
Length = 369
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -1
Query: 502 ESEEQQERHHKTEQTHSLRQGETQNGV*EQXXLEGGVPXIADDEGAEDCSNTSSGTS 332
E ++ER + E+T SL + N E L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQG---TFGPDDNQDDSSNTSSGVS 206
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 117 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 290
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 291 LPNS 302
+PN+
Sbjct: 239 MPNA 242
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 511 NSLESEEQQERHHKTEQTHSLRQ 443
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>10_08_0886 + 21307977-21308007,21308113-21308240
Length = 52
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 96 GAARDNKEHREGGDRPLECS-ISEWRNE 16
GAA D RE GDRP + + WR E
Sbjct: 23 GAAADGVHEREAGDRPAKAQWMDGWRRE 50
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 269 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 123
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 117 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 293
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 294 P 296
P
Sbjct: 100 P 100
>02_01_0775 + 5775949-5777385
Length = 478
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 202 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 86
GG +W Q RV G GC G + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,302,860
Number of Sequences: 37544
Number of extensions: 413983
Number of successful extensions: 1251
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -