Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_M23
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 126 3e-30
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 33 0.039
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 33 0.052
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.4
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 3.4
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.5
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 7.9
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 7.9
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 126 bits (304), Expect = 3e-30
Identities = 62/149 (41%), Positives = 92/149 (61%), Gaps = 2/149 (1%)
Frame = +2
Query: 251 EYEKAQQRSLNDPEGFWGEVGSEL-EWTKPWDRVLDDS-NAPFTKWWVGGEMSVCYNAVD 424
EY++ + S+NDP FWG + ++ W K + V+ S + + W+ G +S CYN VD
Sbjct: 34 EYKRMYEESINDPSTFWGNMARDMMTWDKQFSTVVQGSIDKADSAWFADGAISPCYNLVD 93
Query: 425 RHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLV 604
RH + R + AL++++ + R I+Y EL VS+ AG L ++GV G RV IYMP++
Sbjct: 94 RHAI-ARPDAVALIYEADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMI 152
Query: 605 PXAIIXMLATNRIGAIHSVVFGGFAAREL 691
P II MLA R+GAIHSV+F GF+A +
Sbjct: 153 PETIIAMLAIVRLGAIHSVIFAGFSAESV 181
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 33.1 bits (72), Expect = 0.039
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +2
Query: 452 QFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLVPXAIIXMLA 631
+FAL + +R ++Y+EL ++ ++LA L + G G+ + +Y A I MLA
Sbjct: 2737 EFALDINQDSVQLIR-LTYSELNERANKLAHNLKSYGFRVGSIIAVYFDKCIEAFISMLA 2795
Query: 632 TNRIG 646
+ G
Sbjct: 2796 ILKAG 2800
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 32.7 bits (71), Expect = 0.052
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 500 ISYNELKDQVSRLAGKLTTLGVSKGARVLIYMP 598
+S+N++ D+ R AG L LG++KG + +Y P
Sbjct: 97 LSFNDIYDKALRYAGALRKLGLNKGDKFELYAP 129
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 387 THHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGS 283
+HH V L S +R H +H+ S P S + S
Sbjct: 307 SHHNVRTTLFSDDSRFHSKIHTHSTPPSQMYSAAS 341
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 497 KISYNELKDQVSRLAGKLTTLGVSKGARV 583
K SYN LK Q S L GK++ + + G R+
Sbjct: 69 KNSYNSLKQQHSNLLGKVSGIKSTLGERL 97
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 399 ISPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFNDLCW 265
I+ P+HH VN S +H++S SPQ+ SF+ W
Sbjct: 8 INKPSHHNVN-----YNGNSFNSIHATSFGMSPQSWGNSFSGQAW 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 396 SPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFND 274
S P N + S+ T S HS P SP +PS ++ D
Sbjct: 280 SQPPRPPTNASTRSTGTSS-SMAHSYDSPPSPSSPSDAYGD 319
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 189 LSSLIDDSNLLFSILLPTSFCWCILKP 109
L+S + + F+ +L T FCW +L P
Sbjct: 81 LASTLKQRVIFFTRVLLTFFCWTVLLP 107
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 67 YIFNFFGFCLRLIFRF*NAPT--K*SWQQNREK 159
++F+ FG C ++FRF P+ K SW + EK
Sbjct: 75 FLFSLFGSC--MLFRFIKYPSTIKDSWNHHLEK 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,898
Number of Sequences: 5004
Number of extensions: 64546
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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