Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_M19
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 559 KVSIFH-HGNHAITIHRLPSKELK 491
           K+ +F  H N  IT++R P  + K
Sbjct: 151 KIHVFSLHDNKLITMYRFPQNQFK 174


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -2

Query: 142 HLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQLNRKGHKQ*HR 8
           H   S+  +  +    L  +      +N F+ Q+L+R+G +  H+
Sbjct: 610 HASASEESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHK 654


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -2

Query: 142 HLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQQLNRKGHKQ*HR 8
           H   S+  +  +    L  +      +N F+ Q+L+R+G +  H+
Sbjct: 578 HASASEESVHSMELRTLPCLLPRPKSENNFASQELSREGRRIFHK 622


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 507 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 409
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 507 PVKN*SSLNLPRMSFITLFMFVLNTSTWSGAFS 409
           PV+   +L+LPR +    F    N+ T +G +S
Sbjct: 197 PVQVVKNLHLPRFTLEKFFTDYCNSKTNTGEYS 229


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -3

Query: 168 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 64
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,967
Number of Sequences: 438
Number of extensions: 4575
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)