Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_M17
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   2.0  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    27   2.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 239 YILCFN*MYCVKTYLNLKLVSE 304
           Y++C+N +Y  KT +N KL+SE
Sbjct: 72  YVMCYNTVYHQKTKINDKLLSE 93


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = -2

Query: 345 YRQNYKEAHTYNTISETSLRFRYVFTQYI*LK 250
           ++ + KE++ ++  S  SLR RY++T ++ LK
Sbjct: 133 WKSSLKESYAFSNRSSFSLRKRYLWTTFLSLK 164


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 360 KTLIIYRQNYKEAHTYNTISETSLRFRYVFTQ 265
           K L+ Y   + +A+TY+T+++      Y FT+
Sbjct: 542 KQLLEYDSQFTQANTYDTLNDPRATLLYAFTR 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,147
Number of Sequences: 5004
Number of extensions: 51664
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)