Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_M17
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p...    30   1.9  
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos...    30   1.9  
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    27   9.9  

>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 378 KFCTKRKTLIIYRQNYKEAHTYNTISETSLR 286
           K  T RKT+I   +N + A +YNT+ +  LR
Sbjct: 574 KAFTSRKTMIPVSENARNASSYNTLPDVKLR 604


>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 378 KFCTKRKTLIIYRQNYKEAHTYNTISETSLR 286
           K  T RKT+I   +N + A +YNT+ +  LR
Sbjct: 574 KAFTSRKTMIPVSENARNASSYNTLPDVKLR 604


>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
           and X-chromosomeassociated MIX-1 protein protein.
          Length = 1244

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 378 KFCTKRKTLIIYRQNYKEAHTYNTISETSLR 286
           K  T RKT+I   +N + A +YNT+ +  LR
Sbjct: 574 KAFTSRKTMIPVSENARNASSYNTLPDVKLR 604


>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
           protein M106.1 protein.
          Length = 1244

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 378 KFCTKRKTLIIYRQNYKEAHTYNTISETSLR 286
           K  T RKT+I   +N + A +YNT+ +  LR
Sbjct: 574 KAFTSRKTMIPVSENARNASSYNTLPDVKLR 604


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 653 FIN*QYNLFTNMYTTPNFNIHMYDQYSNS 567
           F N  YN F N YT  N N + Y   +N+
Sbjct: 576 FFNNNYNSFNNWYTNKNKNYYPYSNSNNN 604


>U88179-4|AAU05547.1|  576|Caenorhabditis elegans Hypothetical
           protein R57.1b protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 638 YNLFTNMYTTPNFNIHMYDQYSNSMH 561
           Y L+  MY TP  NIH+ D  + S+H
Sbjct: 539 YPLYHTMYETPFSNIHLLDTDNLSVH 564


>U88179-3|AAX88809.1|  751|Caenorhabditis elegans Hypothetical
           protein R57.1c protein.
          Length = 751

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 638 YNLFTNMYTTPNFNIHMYDQYSNSMH 561
           Y L+  MY TP  NIH+ D  + S+H
Sbjct: 539 YPLYHTMYETPFSNIHLLDTDNLSVH 564


>U88179-2|AAU05546.1|  770|Caenorhabditis elegans Hypothetical
           protein R57.1a protein.
          Length = 770

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 638 YNLFTNMYTTPNFNIHMYDQYSNSMH 561
           Y L+  MY TP  NIH+ D  + S+H
Sbjct: 558 YPLYHTMYETPFSNIHLLDTDNLSVH 583


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 221 SFKQSVYILCFN*MYCVKTY-LNLKLVSE 304
           ++  S+Y+LC + M CV +Y L+L++ SE
Sbjct: 100 TYSISIYLLCVSFMVCVLSYTLSLRISSE 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,579
Number of Sequences: 27780
Number of extensions: 282372
Number of successful extensions: 561
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)