Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_M16
(813 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 29 1.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.4
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 27 4.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 5.5
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 7.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 7.3
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 26 7.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 9.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 9.7
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 9.7
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -2
Query: 668 QVLLQVKFNTQCIYYYINLNLNQTQKSSTLHSMRLSVWV*YICRSGICGC 519
++LL C ++ L+LN+ + L +R + ++ SGICGC
Sbjct: 93 KLLLDAFEKKGCDVHFYALDLNEAELQKGLQELRQTTNYQHVKVSGICGC 142
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 228 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 365
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 592 RAQPFIV*GYQYGCNTFVGAGYVDVS*TLMGIDALQ 485
RA P ++ G N + + Y D MGIDAL+
Sbjct: 36 RAPPPVIDGSSVDANRIIRSDYADAVYCSMGIDALE 71
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 240 TDEAPEDSPAENGDAEESND-ASENGDATEKKET 338
T+E E S + D+E S+D +SE+GD+ ++
Sbjct: 194 TEEKKEGSSESSSDSESSSDSSSESGDSDSSSDS 227
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 246 EAPEDSPAENGDAEESNDASENGDATEK 329
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 228 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 365
++ DE E+ EN D + D +EN + + E G S A+
Sbjct: 246 RDEDVDEEEEEDDDENNDEGDDEDENENDEL--RSENGSPNPSAAV 289
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 666 LQIVNLCM*LPVTECIAVN*SHKIECCMLFYVSLSFS 776
LQ + L M L + C+ + + + CC+ F VSLSF+
Sbjct: 74 LQKLRLKMDLRIIPCLWI--LYFLSCCLRFTVSLSFT 108
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 261 SPAENGDAEESNDASENGDAT 323
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 228 KENGTDEAPEDSPAENGDAEESNDASENGD 317
++N TDEA ED+ + D + S + D
Sbjct: 362 EDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 228 KENGTDE---APEDSPAENGDAEESNDASENGDATEKKE 335
K+NG E + +DS ++ + ESND S + DA + +
Sbjct: 376 KKNGIQEDSQSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 255 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 356
E+ E+ E NDA+E G + +K+ K+KS
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,663
Number of Sequences: 5004
Number of extensions: 44014
Number of successful extensions: 127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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