Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_M16
(813 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0692 + 19502878-19502920,19505011-19505104,19505196-195052... 31 1.4
01_03_0137 - 12904727-12904981,12907192-12907605 30 2.5
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 29 3.3
10_07_0020 - 11944054-11944653,11944734-11944847,11944917-119449... 29 5.8
10_06_0155 + 11306808-11306956,11307157-11307418,11307496-113076... 29 5.8
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 29 5.8
01_06_1610 - 38625427-38625726,38625814-38625885,38626001-386261... 29 5.8
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 28 7.7
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 28 7.7
>09_04_0692 +
19502878-19502920,19505011-19505104,19505196-19505227,
19505833-19506074,19506758-19506994,19508283-19508396
Length = 253
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 533 RSYKCITPILIASYYEGLSSFVSDLSLGLYNNKYIVY*ILPVKVPANCKFMYVTASD*MH 712
+ Y C P+ + + + +SDL+ Y Y+ L V+V ANC+ + +D ++
Sbjct: 143 KPYICTMPLKLEDGWNNIQLNLSDLTKRAYGTNYVE--TLRVQVHANCRLRRIYFADRLY 200
Query: 713 RSELIT*D*VLY 748
E + + LY
Sbjct: 201 SEEELPPEFKLY 212
>01_03_0137 - 12904727-12904981,12907192-12907605
Length = 222
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 234 NGTDEAPEDS-PAENGDAEESNDASENGDATEK-KETGVK 347
NG +E E++ E GD +E D E GD E+ E G K
Sbjct: 45 NGEEEVEEEAVDGEEGDGDEEGDGEEEGDDEEEDAEEGEK 84
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 360 PQISSSHQSLSFLWHHRSQMHRCFLQHHHFQQANLLG 250
PQI L +W + + H+ +Q+H QQANLLG
Sbjct: 461 PQIIELSAGLVHMWRNMYECHQ--VQNHIAQQANLLG 495
>10_07_0020 -
11944054-11944653,11944734-11944847,11944917-11944976,
11945154-11945474,11945556-11945594
Length = 377
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 255 EDSPAENGDAEESNDASENGDATEKKETGVKRKSVA 362
+D PA + E++ D E G+ +KK+T VK+KS A
Sbjct: 99 DDLPALDPSIEQALDEEEIGE--DKKKTAVKKKSAA 132
>10_06_0155 +
11306808-11306956,11307157-11307418,11307496-11307697,
11308118-11308353
Length = 282
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 222 NGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKET 338
N NGT+++ D +EN E++D N D E+ E+
Sbjct: 242 NDHSNGTEDSLRDEESENSKI-ETDDKDSNSDTEEETES 279
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 472 YAWFTAMHQCPLEFNSHPHIPLLQMYYTHTDSLI 573
Y T Q PL+F + H+P LQ Y+ +S++
Sbjct: 2079 YPLNTIQPQVPLQFPNQLHVPQLQFYHQTQESVL 2112
>01_06_1610 -
38625427-38625726,38625814-38625885,38626001-38626117,
38626509-38626674,38626768-38626815,38626889-38626962,
38627126-38627243,38627332-38627420,38627512-38627687,
38627785-38627898,38627981-38628051,38628431-38628477,
38628581-38628721,38629095-38629136
Length = 524
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 234 NGTDEAPEDSPAENGDAEESNDASENGDATE 326
+G + + SP+ NGDA+E ++ +N D+ +
Sbjct: 433 SGENNSINPSPSSNGDAKEPTESQDNDDSDD 463
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 222 NGKENGTDEAPEDSPAENGDAEESNDASE-NGDATEKKE 335
+G E+ T+E ED + D+EE++D E + D E+ +
Sbjct: 538 SGDEDDTEELDEDQDISDNDSEENDDELELDSDMDEEND 576
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 231 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 341
E+ ++ +D+ E+ EE ND E+GD E G
Sbjct: 81 EDAENQGDDDAGDEDASEEEGNDEDEDGDPEANGEGG 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,865,694
Number of Sequences: 37544
Number of extensions: 259648
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -