Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_M16
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 34 0.11
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 33 0.24
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical pr... 29 5.2
U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeo... 29 5.2
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 5.2
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 5.2
Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical pr... 28 6.9
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 228 KENGTDEAPEDSPAENGD-AEESNDASENGDATEKKETGVKRKS 356
++N E DSP + D +++S+DASEN ++E E K+K+
Sbjct: 36 EDNDEKEKAADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKN 79
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = +3
Query: 222 NGKENGTDEAPEDSPA-ENGDAEESNDASENGDATEKKE 335
NG+E+ +EA ++ A +NG+ ++ +AS+NG+ ++ E
Sbjct: 182 NGEESDNEEASDNGEASDNGEESDNEEASDNGEESDNGE 220
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 222 NGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 335
NG+E G EA ++NGD ++ +AS+NG+ ++ +E
Sbjct: 218 NGEERGNGEA-----SDNGDESDNGEASDNGEESDNEE 250
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 222 NGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 335
NG+E G EA ++NGD ++ +AS+NG+ ++ +E
Sbjct: 266 NGEERGNGEA-----SDNGDESDNGEASDNGEESDNEE 298
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 222 NGKENGTDEAPEDSPAE-NGDAEESNDASENGDATEKKE 335
NG+E+ E ++ NG+A ++ D S+NG+A++ E
Sbjct: 254 NGEESDNGEESDNGEERGNGEASDNGDESDNGEASDNGE 292
Score = 29.9 bits (64), Expect = 2.3
Identities = 10/35 (28%), Positives = 25/35 (71%)
Frame = +3
Query: 231 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 335
+NG +E+ + ++NG+ ++ +AS+NG+ ++ +E
Sbjct: 289 DNG-EESDNEEASDNGEESDNGEASDNGEESDNEE 322
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Frame = +3
Query: 222 NGKENGTDEAPE-----DSPAE--NGDAEESNDASENGDATEKKE 335
NG+E+ +EA + D+ E NG+A ++ D S+NG+A++ E
Sbjct: 200 NGEESDNEEASDNGEESDNGEERGNGEASDNGDESDNGEASDNGE 244
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/39 (28%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 222 NGKENGT-DEAPEDSPAENGDAEESNDASENGDATEKKE 335
NG+E+ +E+ + ++NG+A ++ + S+N +A++ E
Sbjct: 176 NGEESDNGEESDNEEASDNGEASDNGEESDNEEASDNGE 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 335
+NG DE+ ++NG+ ++ +AS+NG+ ++ E
Sbjct: 229 DNG-DESDNGEASDNGEESDNEEASDNGEESDNGE 262
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3
Query: 231 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 335
+NG DE+ ++NG+ ++ +AS+NG+ ++ E
Sbjct: 277 DNG-DESDNGEASDNGEESDNEEASDNGEESDNGE 310
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +3
Query: 231 ENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 335
+NG +E+ + ++NG+ ++ +AS+NG+ ++ E
Sbjct: 313 DNG-EESDNEEASDNGEESDNGEASDNGEESDNGE 346
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/31 (25%), Positives = 22/31 (70%)
Frame = +3
Query: 243 DEAPEDSPAENGDAEESNDASENGDATEKKE 335
+E+ + ++NG+A ++ + S+NG+ ++ +E
Sbjct: 160 EESDNEIESDNGEASDNGEESDNGEESDNEE 190
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 222 NGKENGTDEAPEDSP-AENGDAEESNDASENGDATEKKE 335
N E+ EA ++ ++NG+ ++ +AS+NG+A++ E
Sbjct: 164 NEIESDNGEASDNGEESDNGEESDNEEASDNGEASDNGE 202
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 231 ENGTDEAPEDSPAENGDAEESNDASENGDATE 326
E G+ EAP + A AEE+N+ SE +TE
Sbjct: 372 EQGSSEAPVEMTATEDTAEETNNESEVEASTE 403
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 231 ENGTDEAPEDSPAENGDAEESNDASENGDATE 326
E G+ EAP + A AEE+N+ SE +TE
Sbjct: 372 EQGSSEAPVEMTATEDTAEETNNESEVEASTE 403
>Z81115-5|CAB03295.1| 482|Caenorhabditis elegans Hypothetical
protein T05D4.5 protein.
Length = 482
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 228 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVA 362
K++ DE +D+ E E + GD +KK+ G K+K A
Sbjct: 425 KKDAEDEKKKDAGDEKKKDAEDEKKKDAGDEKKKKDAGEKKKKDA 469
>U40933-6|AAQ23123.1| 199|Caenorhabditis elegans C.elegans homeobox
protein 19,isoform b protein.
Length = 199
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 255 EDSPAENG-DAEESNDASENGDATEKKE 335
+ +P E G D EE ND+ +NG+ E++E
Sbjct: 12 KSNPVEEGNDFEEENDSEKNGEEDEEEE 39
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 228 KENGTDEAPED-SPAENGDAEESNDASENGDATEKKETG 341
+ N + P+D +P NG+A+ + A+ NG+ T +TG
Sbjct: 120 ESNSPEHLPKDKAPIMNGNAKNAPAANRNGNNTSTAKTG 158
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 228 KENGTDEAPED-SPAENGDAEESNDASENGDATEKKETG 341
+ N + P+D +P NG+A+ + A+ NG+ T +TG
Sbjct: 317 ESNSPEHLPKDKAPIMNGNAKNAPAANRNGNNTSTAKTG 355
>Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical
protein T24D1.5 protein.
Length = 415
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 240 TDEAPEDSPAENGDAEESNDA-SENGDATEKKETG 341
TDE +DS ++ D EES+D+ S N A TG
Sbjct: 202 TDEEEDDSDMDDEDEEESDDSNSPNSAAAVASHTG 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,170,994
Number of Sequences: 27780
Number of extensions: 254029
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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