Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_M14
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    85   5e-18
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   4.0  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.0  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    25   9.3  

>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 38/60 (63%), Positives = 46/60 (76%)
 Frame = +1

Query: 118 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 297
           M+L YYLND+G R YTL  + P G+ T S+HPARFSP+DKYSR R  +KKRF +LLTQ P
Sbjct: 1   MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 384 LKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKSLLD 259
           LK +    QNL H    Q KS F+ +++  L   QQ + L+D
Sbjct: 314 LKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLID 355


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 354 LDHFGNFQCKSIFILMNR 301
           +D FGN+ C+ +F+  +R
Sbjct: 508 IDPFGNYMCQKLFVYASR 525


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 333 QCKSIFILMNRFRLLCKQQAKSLL 262
           +C+++F    +FRL  KQ+  SLL
Sbjct: 217 ECEALFTYPEKFRLYHKQEKYSLL 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,248
Number of Sequences: 5004
Number of extensions: 34853
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)