Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_M11
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    31   0.20 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    31   0.35 

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 17   CISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 118
            C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 974  CKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 212  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 60
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,417,825
Number of Sequences: 27780
Number of extensions: 137265
Number of successful extensions: 250
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)