Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_M03
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo... 30 0.31
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 29 0.96
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 27 2.2
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 27 2.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 3.9
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 26 5.1
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 26 6.7
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 26 6.7
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 25 8.9
>SPBC1711.13 |his2||histidinol dehydrogenase His2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 239 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 373
++DYA K L + DDDL+++S M DI+ AFN I
Sbjct: 54 LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 28.7 bits (61), Expect = 0.96
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = +2
Query: 290 QDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGP 469
+ T DLL+V +++ D +NA ++ + R + PEN+
Sbjct: 550 EQETIPSDLLKVRKDLL--DDSNAAKDTMDKVKKHLKSLLRVGDTARKEFTWPENMPKPC 607
Query: 470 TIRPFVALFDNYHKNVIRPEFVTPNEETEQ 559
+ V YH+ V+R F+ E EQ
Sbjct: 608 EVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 430 EFIKRS*EC-MERTNNKTFCCTIRQLSQECDQTRVCYAE*RNGTNH-LHQH 576
E K +C +R + T CC IR ++ +CD N T H +H+H
Sbjct: 28 ELNKNPKDCNSKRKRSVTECCEIRLITSKCDFESTQQLVHHNCTGHKVHEH 78
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 235 TNNCAYLLESVLSCVALLTSHMIADQVGKDVVEDLARSL 119
TN C+ ++ CV L H+IA + G+D + DL R L
Sbjct: 135 TNPCSPDEKNQNDCVDLKV-HLIAKEDGRDAIIDLTRGL 172
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +2
Query: 329 EEMFNADINNAFNYIQVNLQGKTTPMSRNDEAQSNLLNVPENVWSGPTI-RPFVALFDNY 505
E+ F D + N I Q + P + + + L P + + F F+N
Sbjct: 178 EDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNE 237
Query: 506 HKNVIRPEFVTPNEETEQTTYINTILATGP 595
+++ R + +PN ++ YI++ ++ P
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTISYQP 267
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 687 SRSTHATGPAFANAVAPSXTCL 752
S ST P F N AP+ TCL
Sbjct: 45 SNSTTVPPPPFVNTTAPNGTCL 66
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 685 PNLSQQLNLFWVLIQLSNAFVD*ESNEAPDGSRSKNSVDVSGLFRFF 545
P+ S+ F L LSN +S+ G + NSV GLF FF
Sbjct: 292 PSASETFRYF--LPMLSNGRDAKKSSSKSHGGKQNNSVAKDGLFDFF 336
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 287 AQDSTTDDDLLRVSEEMFNADI 352
AQD DDD+ + EE+F+ D+
Sbjct: 33 AQDDEPDDDIDALIEELFSEDV 54
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 551 TEQTTYINTIL---ATGPIRSLITFLVNKGITQLNEY 652
TE+ + +L A GP+ S++TF NK +++L EY
Sbjct: 377 TEKPVIVGLLLFSDALGPLSSILTFASNK-VSRLCEY 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,951,093
Number of Sequences: 5004
Number of extensions: 58394
Number of successful extensions: 216
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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