Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_M01
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   2.2  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   6.7  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   8.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.9  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 136 SLCSAKKAAQKPDWAKKDIRDFSDAD 213
           +L +A+KA    DW  K + +F DAD
Sbjct: 544 ALAAARKALSFQDWLDKKMLEFEDAD 569


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
 Frame = +1

Query: 172 DWAKKDIRDFSDADMERLLDQWXXXXXXXXXXXXXXHLRKPPALD-LTKMDMSNPEAVLQ 348
           +W   D  D + A M+RLLD                 L    AL+ +TK+  SN   V  
Sbjct: 112 NWLIADRND-TQAIMKRLLDSLKKAKNPIASGIRGQELTPQNALNRITKLK-SNGLLV-- 167

Query: 349 ATKKGQTLMMFVSVANKPSRA----RTEEITKIWQTSLWSNHI 465
             K G   +  ++   +P +     ++ E+ +++QTSLW N++
Sbjct: 168 --KPGMDQLSLINGLEEPPKELQSHQSVELYRLYQTSLWKNNL 208


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 566 SLKKFNWKVKHTQERNLIL 622
           +LK+F WKV HT ++   L
Sbjct: 438 ALKRFPWKVPHTSDKRFNL 456


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 379 FVSVANKPSRARTEEITKIWQTSLWSNHIQA 471
           ++S+  KP+ A  E I  +WQ  L++   +A
Sbjct: 417 YISIVQKPNIAFPEIILFLWQAILYNKRFRA 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,982
Number of Sequences: 5004
Number of extensions: 50405
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)