Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_M01
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0353 - 20541242-20541559,20543475-20543477                       29   5.3  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    28   9.3  

>05_04_0353 - 20541242-20541559,20543475-20543477
          Length = 106

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 414 SCSRRFVGHRHKHHQSLAFFSC 349
           SC  R V HR +  +SLAFF C
Sbjct: 10  SCLHRAVVHREQERRSLAFFLC 31


>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
            22582341-22582477,22582567-22582683,22583277-22583440,
            22583542-22583756,22583838-22584004,22584206-22584559,
            22584647-22584795,22584907-22585030,22585132-22585371,
            22585723-22586140,22586297-22586920,22586999-22587183,
            22587302-22587412,22587583-22587789,22587869-22587967,
            22588063-22588159,22588296-22588384,22588495-22588548,
            22588671-22588793,22588872-22588940,22589020-22589089,
            22589202-22589260,22589367-22589570,22590032-22590060,
            22590375-22590433,22590513-22590634,22591637-22591830,
            22591974-22592088
          Length = 1680

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
 Frame = +1

Query: 91   DKMVKTVLIALILWISLCSAKKAAQKPDWAKKDIRDFSDADMERLLDQWXXXXXXXXXXX 270
            D M    L +L+ +  L + K+   K   A + +   +D DM+ L D W           
Sbjct: 825  DTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLGLADTDMDALQDTW---NAVLECVS 881

Query: 271  XXXHLRKPPALDLTKMDMSNP---EAVLQATKK--GQTL-MMFVSVANKPSRARTEEITK 432
               ++   P++  T M  SN    E+V+Q+ K+  G+    +FV+    PS +  E  T 
Sbjct: 882  RLEYITSNPSIAATVMQGSNQISRESVVQSLKELSGKPAEQVFVNSVKLPSDSIVEFFTA 941

Query: 433  I 435
            +
Sbjct: 942  L 942


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,233
Number of Sequences: 37544
Number of extensions: 283761
Number of successful extensions: 552
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)