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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L21
         (758 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D90228-1|BAA14278.1|  427|Homo sapiens mitochondrial acetoacetyl...   258   2e-68
D10511-1|BAA01387.1|  427|Homo sapiens mitochondrial acetoacetyl...   258   2e-68
BC000408-1|AAH00408.1|  397|Homo sapiens ACAT2 protein protein.       148   2e-35
AL135914-6|CAI21850.1|  397|Homo sapiens acetyl-Coenzyme A acety...   148   2e-35
AF356877-1|AAM00223.1|  397|Homo sapiens acetyl CoA transferase-...   148   2e-35
AB208993-1|BAD92230.1|  404|Homo sapiens Acetyl-CoA acetyltransf...   148   2e-35
S70154-1|AAB30856.1|  397|Homo sapiens cytosolic acetoacetyl-coe...   146   1e-34
BC010942-1|AAH10942.1|  162|Homo sapiens ACAT1 protein protein.       122   1e-27
BC063853-1|AAH63853.1|  289|Homo sapiens ACAT1 protein protein.       119   1e-26
BC001918-1|AAH01918.1|  397|Homo sapiens acetyl-Coenzyme A acylt...   103   9e-22
D16294-1|BAA03800.1|  397|Homo sapiens mitochondrial 3-oxoacyl-C...   101   3e-21
X65140-1|CAA46270.1|  424|Homo sapiens peroxisomal 3-oxoacyl-CoA...    77   5e-14
X14813-1|CAA32918.1|  424|Homo sapiens protein ( Human liver mRN...    77   5e-14
X12966-1|CAA31412.1|  424|Homo sapiens protein ( Human mRNA for ...    77   5e-14
BC011977-1|AAH11977.1|  424|Homo sapiens acetyl-Coenzyme A acylt...    77   5e-14
BC000635-1|AAH00635.1|  424|Homo sapiens acetyl-Coenzyme A acylt...    77   5e-14
BC014572-1|AAH14572.1|  475|Homo sapiens hydroxyacyl-Coenzyme A ...    75   4e-13
D16481-1|BAA03942.1|  474|Homo sapiens 3-ketoacyl-CoA thiolase b...    74   5e-13
BC066963-1|AAH66963.1|  475|Homo sapiens hydroxyacyl-Coenzyme A ...    74   5e-13
BC030824-1|AAH30824.1|  475|Homo sapiens hydroxyacyl-Coenzyme A ...    74   5e-13
BC017564-1|AAH17564.1|  475|Homo sapiens hydroxyacyl-Coenzyme A ...    74   5e-13
AC010896-2|AAY14644.1|  474|Homo sapiens unknown protein.              74   5e-13
BC014474-1|AAH14474.1|  331|Homo sapiens ACAA1 protein protein.        54   1e-11
X51460-1|CAA35825.1|  326|Homo sapiens 3-oxoacyl-CoA thiolase pr...    64   5e-10
U49441-1|AAB09424.1|  224|Homo sapiens mitochondrial trifunction...    54   4e-07
D86850-1|BAA22061.1|  410|Homo sapiens 3-ketoacyl-CoA thiolase b...    52   2e-06
AF035295-1|AAB88181.1|  132|Homo sapiens protein ( Homo sapiens ...    41   0.006

>D90228-1|BAA14278.1|  427|Homo sapiens mitochondrial
           acetoacetyl-CoA thiolase precursor protein.
          Length = 427

 Score =  258 bits (632), Expect = 2e-68
 Identities = 124/212 (58%), Positives = 152/212 (71%)
 Frame = +2

Query: 122 AFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYI 301
           ++ +K +L EVVI SA RTP+                   +  AIE+AGIPKEE+KE Y+
Sbjct: 32  SYVSKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYM 91

Query: 302 GNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAG 481
           GNV     GQAP RQAV+ AGLP ST CTT+NKVCASGMK+IM+A+Q L  G QD+++AG
Sbjct: 92  GNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAG 151

Query: 482 GMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQ 661
           GMESMSNVP+ + RG T YGG++L D IV DGLTDVYNK HMG+CAENTAKKL I R +Q
Sbjct: 152 GMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQ 211

Query: 662 DEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           D YA+NSY RS AA+EA  F +E++PV V  K
Sbjct: 212 DAYAINSYTRSKAAWEAGKFGNEVIPVTVTVK 243


>D10511-1|BAA01387.1|  427|Homo sapiens mitochondrial
           acetoacetyl-CoA thiolase protein.
          Length = 427

 Score =  258 bits (632), Expect = 2e-68
 Identities = 124/212 (58%), Positives = 152/212 (71%)
 Frame = +2

Query: 122 AFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYI 301
           ++ +K +L EVVI SA RTP+                   +  AIE+AGIPKEE+KE Y+
Sbjct: 32  SYVSKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYM 91

Query: 302 GNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAG 481
           GNV     GQAP RQAV+ AGLP ST CTT+NKVCASGMK+IM+A+Q L  G QD+++AG
Sbjct: 92  GNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAG 151

Query: 482 GMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQ 661
           GMESMSNVP+ + RG T YGG++L D IV DGLTDVYNK HMG+CAENTAKKL I R +Q
Sbjct: 152 GMESMSNVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQ 211

Query: 662 DEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           D YA+NSY RS AA+EA  F +E++PV V  K
Sbjct: 212 DAYAINSYTRSKAAWEAGKFGNEVIPVTVTVK 243


>BC000408-1|AAH00408.1|  397|Homo sapiens ACAT2 protein protein.
          Length = 397

 Score =  148 bits (359), Expect = 2e-35
 Identities = 81/204 (39%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
 Frame = +2

Query: 152 VVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLGQ 331
           VVI SA RT +                   +   ++RA +  E++ EV  G+V +A  GQ
Sbjct: 8   VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67

Query: 332 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 511
            P RQA + AG+P S    +   +C SG+K++ LA Q +  G   I++AGGME+MS  P 
Sbjct: 68  NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPH 127

Query: 512 --YLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSY 685
             YL+ G    G M L D I+ DGLTD ++  HMG  AEN AKK Q++R+DQD+ AV S 
Sbjct: 128 LAYLRTG-VKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQ 186

Query: 686 KRSAAAYEAKAFVDELVPVPVPXK 757
            R+  A +A  F  E+VPV V  +
Sbjct: 187 NRTENAQKAGHFDKEIVPVLVSTR 210


>AL135914-6|CAI21850.1|  397|Homo sapiens acetyl-Coenzyme A
           acetyltransferase 2 (acetoacetyl Coenzyme A thiolase)
           protein.
          Length = 397

 Score =  148 bits (359), Expect = 2e-35
 Identities = 81/204 (39%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
 Frame = +2

Query: 152 VVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLGQ 331
           VVI SA RT +                   +   ++RA +  E++ EV  G+V +A  GQ
Sbjct: 8   VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67

Query: 332 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 511
            P RQA + AG+P S    +   +C SG+K++ LA Q +  G   I++AGGME+MS  P 
Sbjct: 68  NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPH 127

Query: 512 --YLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSY 685
             YL+ G    G M L D I+ DGLTD ++  HMG  AEN AKK Q++R+DQD+ AV S 
Sbjct: 128 LAYLRTG-VKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQ 186

Query: 686 KRSAAAYEAKAFVDELVPVPVPXK 757
            R+  A +A  F  E+VPV V  +
Sbjct: 187 NRTENAQKAGHFDKEIVPVLVSTR 210


>AF356877-1|AAM00223.1|  397|Homo sapiens acetyl CoA
           transferase-like protein protein.
          Length = 397

 Score =  148 bits (359), Expect = 2e-35
 Identities = 81/204 (39%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
 Frame = +2

Query: 152 VVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLGQ 331
           VVI SA RT +                   +   ++RA +  E++ EV  G+V +A  GQ
Sbjct: 8   VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67

Query: 332 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 511
            P RQA + AG+P S    +   +C SG+K++ LA Q +  G   I++AGGME+MS  P 
Sbjct: 68  NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPH 127

Query: 512 --YLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSY 685
             YL+ G    G M L D I+ DGLTD ++  HMG  AEN AKK Q++R+DQD+ AV S 
Sbjct: 128 LAYLRTG-VKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQ 186

Query: 686 KRSAAAYEAKAFVDELVPVPVPXK 757
            R+  A +A  F  E+VPV V  +
Sbjct: 187 NRTENAQKAGHFDKEIVPVLVSTR 210


>AB208993-1|BAD92230.1|  404|Homo sapiens Acetyl-CoA
           acetyltransferase, cytosolic variant protein.
          Length = 404

 Score =  148 bits (359), Expect = 2e-35
 Identities = 81/204 (39%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
 Frame = +2

Query: 152 VVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLGQ 331
           VVI SA RT +                   +   ++RA +  E++ EV  G+V +A  GQ
Sbjct: 15  VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 74

Query: 332 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 511
            P RQA + AG+P S    +   +C SG+K++ LA Q +  G   I++AGGME+MS  P 
Sbjct: 75  NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPH 134

Query: 512 --YLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSY 685
             YL+ G    G M L D I+ DGLTD ++  HMG  AEN AKK Q++R+DQD+ AV S 
Sbjct: 135 LAYLRTG-VKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQ 193

Query: 686 KRSAAAYEAKAFVDELVPVPVPXK 757
            R+  A +A  F  E+VPV V  +
Sbjct: 194 NRTENAQKAGHFDKEIVPVLVSTR 217


>S70154-1|AAB30856.1|  397|Homo sapiens cytosolic
           acetoacetyl-coenzyme A thiolase protein.
          Length = 397

 Score =  146 bits (353), Expect = 1e-34
 Identities = 80/204 (39%), Positives = 112/204 (54%), Gaps = 2/204 (0%)
 Frame = +2

Query: 152 VVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLGQ 331
           VVI SA RT +                   +   ++RA +  E++ EV  G+V +A  GQ
Sbjct: 8   VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67

Query: 332 APARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPF 511
            P RQA + AG+P S    +   +C SG+K++ LA Q +  G   I++AGGME+MS  P 
Sbjct: 68  NPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAPH 127

Query: 512 --YLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSY 685
             YL+ G    G M L D I+ DGLTD ++  HMG  AEN A K Q++R+DQD+ AV S 
Sbjct: 128 LAYLRTG-VKIGEMPLTDSILCDGLTDAFHNCHMGITAENVATKWQVSREDQDKVAVLSQ 186

Query: 686 KRSAAAYEAKAFVDELVPVPVPXK 757
            R+  A +A  F  E+VPV V  +
Sbjct: 187 NRTENAQKAGHFDKEIVPVLVSTR 210


>BC010942-1|AAH10942.1|  162|Homo sapiens ACAT1 protein protein.
          Length = 162

 Score =  122 bits (295), Expect = 1e-27
 Identities = 60/114 (52%), Positives = 74/114 (64%)
 Frame = +2

Query: 122 AFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYI 301
           ++ +K +L EVVI SA RTP+                   +  AIE+AGIPKEE+KE Y+
Sbjct: 32  SYVSKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYM 91

Query: 302 GNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQ 463
           GNV     GQAP RQAV+ AGLP ST CTT+NKVCASGMK+IM+A+Q L  G Q
Sbjct: 92  GNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQ 145


>BC063853-1|AAH63853.1|  289|Homo sapiens ACAT1 protein protein.
          Length = 289

 Score =  119 bits (286), Expect = 1e-26
 Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 6/154 (3%)
 Frame = +2

Query: 314 SANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 493
           +  LG    + A+  AG+PK        +V  + M +++   +G Q   +  +L  G + 
Sbjct: 64  ATKLGSIAIQGAIEKAGIPKE-------EVKEAYMGNVLQGGEG-QAPTRQAVLGAGCDG 115

Query: 494 MS------NVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQ 655
                   +VP+ + RG T YGG++L D IV DGLTDVYNK HMG+CAENTAKKL I R 
Sbjct: 116 GRWDGEHVHVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARN 175

Query: 656 DQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           +QD YA+NSY RS AA+EA  F +E++PV V  K
Sbjct: 176 EQDAYAINSYTRSKAAWEAGKFGNEVIPVTVTVK 209



 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 37/81 (45%), Positives = 47/81 (58%)
 Frame = +2

Query: 122 AFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYI 301
           ++ +K +L EVVI SA RTP+                   +  AIE+AGIPKEE+KE Y+
Sbjct: 32  SYVSKPTLKEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYM 91

Query: 302 GNVCSANLGQAPARQAVIFAG 364
           GNV     GQAP RQAV+ AG
Sbjct: 92  GNVLQGGEGQAPTRQAVLGAG 112


>BC001918-1|AAH01918.1|  397|Homo sapiens acetyl-Coenzyme A
           acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A
           thiolas protein.
          Length = 397

 Score =  103 bits (246), Expect = 9e-22
 Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 3/208 (1%)
 Frame = +2

Query: 143 LNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSAN 322
           L  V + +A RTP                      AA+    +  E +  V +GNV  ++
Sbjct: 4   LRGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSS 63

Query: 323 LGQAP-ARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 499
                 AR   +  G+PK T   T+N++C SG +SI+   Q +     +++L GG ESMS
Sbjct: 64  SDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMS 123

Query: 500 NVPFYLK--RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYA 673
             P+ ++  R  T  G    ++  ++  LTD + +  M   AEN A K +I+R++ D+YA
Sbjct: 124 QAPYCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLAVKHKISREECDKYA 183

Query: 674 VNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           + S +R  AA +A  F DE+ P+ V  K
Sbjct: 184 LQSQQRWKAANDAGYFNDEMAPIEVKTK 211


>D16294-1|BAA03800.1|  397|Homo sapiens mitochondrial 3-oxoacyl-CoA
           thiolase protein.
          Length = 397

 Score =  101 bits (242), Expect = 3e-21
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 3/208 (1%)
 Frame = +2

Query: 143 LNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSAN 322
           L  V + +A RTP                      AA+    +  E +  V +GNV  ++
Sbjct: 4   LRGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSS 63

Query: 323 LGQAP-ARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMS 499
                 AR   +  G+PK T   T+N++C SG +SI+   Q +     +++L GG ESMS
Sbjct: 64  SDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMS 123

Query: 500 NVPFYLK--RGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYA 673
             P+ ++  R  T  G    ++  ++  LTD + +  M   AEN   K +I+R++ D+YA
Sbjct: 124 QAPYCVRNVRFGTKLGSDIKLEDSLWVSLTDQHVQLPMAMTAENLTVKHKISREECDKYA 183

Query: 674 VNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           + S +R  AA +A  F DE+ P+ V  K
Sbjct: 184 LQSQQRWKAANDAGYFNDEMAPIEVKTK 211


>X65140-1|CAA46270.1|  424|Homo sapiens peroxisomal 3-oxoacyl-CoA
           thiolase protein.
          Length = 424

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 49/167 (29%), Positives = 89/167 (53%)
 Frame = +2

Query: 242 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 421
           + A ++   +  E++ ++ +GNV     G   AR A   + +P++   +TVN+ C+SG++
Sbjct: 69  MTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 128

Query: 422 SIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKF 601
           ++   A G++ G+ DI +A G+ESMS       RG       +L++    +   D     
Sbjct: 129 AVASIAGGIRNGSYDIGMACGVESMS----LADRGNPGNITSRLMEK---EKARDCL--I 179

Query: 602 HMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPV 742
            MG  +EN A++  I+R+ QD +A+ S +++A A     F  E+VPV
Sbjct: 180 PMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPV 226


>X14813-1|CAA32918.1|  424|Homo sapiens protein ( Human liver mRNA
           for 3-oxoacyl-CoA thiolase. ).
          Length = 424

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 49/167 (29%), Positives = 89/167 (53%)
 Frame = +2

Query: 242 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 421
           + A ++   +  E++ ++ +GNV     G   AR A   + +P++   +TVN+ C+SG++
Sbjct: 69  MTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 128

Query: 422 SIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKF 601
           ++   A G++ G+ DI +A G+ESMS       RG       +L++    +   D     
Sbjct: 129 AVASIAGGIRNGSYDIGMACGVESMS----LADRGNPGNITSRLMEK---EKARDCL--I 179

Query: 602 HMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPV 742
            MG  +EN A++  I+R+ QD +A+ S +++A A     F  E+VPV
Sbjct: 180 PMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPV 226


>X12966-1|CAA31412.1|  424|Homo sapiens protein ( Human mRNA for
           3-oxoacyl-CoA peroxisomal thiolase. ).
          Length = 424

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 49/167 (29%), Positives = 89/167 (53%)
 Frame = +2

Query: 242 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 421
           + A ++   +  E++ ++ +GNV     G   AR A   + +P++   +TVN+ C+SG++
Sbjct: 69  MTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 128

Query: 422 SIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKF 601
           ++   A G++ G+ DI +A G+ESMS       RG       +L++    +   D     
Sbjct: 129 AVASIAGGIRNGSYDIGMACGVESMS----LADRGNPGNITSRLMEK---EKARDCL--I 179

Query: 602 HMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPV 742
            MG  +EN A++  I+R+ QD +A+ S +++A A     F  E+VPV
Sbjct: 180 PMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPV 226


>BC011977-1|AAH11977.1|  424|Homo sapiens acetyl-Coenzyme A
           acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A
           thiolase) protein.
          Length = 424

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 49/167 (29%), Positives = 89/167 (53%)
 Frame = +2

Query: 242 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 421
           + A ++   +  E++ ++ +GNV     G   AR A   + +P++   +TVN+ C+SG++
Sbjct: 69  MTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 128

Query: 422 SIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKF 601
           ++   A G++ G+ DI +A G+ESMS       RG       +L++    +   D     
Sbjct: 129 AVASIAGGIRNGSYDIGMACGVESMS----LADRGNPGNITSRLMEK---EKARDCL--I 179

Query: 602 HMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPV 742
            MG  +EN A++  I+R+ QD +A+ S +++A A     F  E+VPV
Sbjct: 180 PMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPV 226


>BC000635-1|AAH00635.1|  424|Homo sapiens acetyl-Coenzyme A
           acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A
           thiolase) protein.
          Length = 424

 Score = 77.4 bits (182), Expect = 5e-14
 Identities = 49/167 (29%), Positives = 89/167 (53%)
 Frame = +2

Query: 242 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 421
           + A ++   +  E++ ++ +GNV     G   AR A   + +P++   +TVN+ C+SG++
Sbjct: 69  MTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 128

Query: 422 SIMLAAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVDGIVFDGLTDVYNKF 601
           ++   A G++ G+ DI +A G+ESMS       RG       +L++    +   D     
Sbjct: 129 AVASIAGGIRNGSYDIGMACGVESMS----LADRGNPGNITSRLMEK---EKARDCL--I 179

Query: 602 HMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPV 742
            MG  +EN A++  I+R+ QD +A+ S +++A A     F  E+VPV
Sbjct: 180 PMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPV 226


>BC014572-1|AAH14572.1|  475|Homo sapiens hydroxyacyl-Coenzyme A
           dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenz
           protein.
          Length = 475

 Score = 74.5 bits (175), Expect = 4e-13
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
 Frame = +2

Query: 134 KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVC 313
           K ++  VV+   VRTP                    +   + R  +PKE +  +  G V 
Sbjct: 49  KPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVI 108

Query: 314 SANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 493
                   AR+A + AG    T   TV   C S  +++      + +G  D+I+AGG+E 
Sbjct: 109 QEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVEL 168

Query: 494 MSNVPFY-----------LKRGETSYGGMQLVDGIVFDGLTD---VYNKFH----MGNCA 619
           MS+VP             L + ++    + L+    F+ L       ++F     MG+ A
Sbjct: 169 MSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLASELPAVSEFSTSETMGHSA 228

Query: 620 ENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           +  A    ++R +QDEYA+ S+  +  A + +  + ++VP  VP K
Sbjct: 229 DRLAAAFAVSRLEQDEYALRSHSLAKKAQD-EGLLSDVVPFKVPGK 273


>D16481-1|BAA03942.1|  474|Homo sapiens 3-ketoacyl-CoA thiolase
           beta-subunit of trifunctional protein protein.
          Length = 474

 Score = 74.1 bits (174), Expect = 5e-13
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
 Frame = +2

Query: 134 KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVC 313
           K ++  VV+   VRTP                    +   + R  +PKE +  +  G V 
Sbjct: 48  KPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVI 107

Query: 314 SANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 493
                   AR+A + AG    T   TV   C S  +++      + +G  D+I+AGG+E 
Sbjct: 108 QEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVEL 167

Query: 494 MSNVPFY-----------LKRGETSYGGMQLVDGIVFDGLT---DVYNKFH----MGNCA 619
           MS+VP             L + ++    + L+    F+ L       ++F     MG+ A
Sbjct: 168 MSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSA 227

Query: 620 ENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           +  A    ++R +QDEYA+ S+  +  A + +  + ++VP  VP K
Sbjct: 228 DRLAAAFAVSRLEQDEYALRSHSLAKKAQD-EGLLSDVVPFKVPGK 272


>BC066963-1|AAH66963.1|  475|Homo sapiens hydroxyacyl-Coenzyme A
           dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenz
           protein.
          Length = 475

 Score = 74.1 bits (174), Expect = 5e-13
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
 Frame = +2

Query: 134 KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVC 313
           K ++  VV+   VRTP                    +   + R  +PKE +  +  G V 
Sbjct: 49  KPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVI 108

Query: 314 SANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 493
                   AR+A + AG    T   TV   C S  +++      + +G  D+I+AGG+E 
Sbjct: 109 QEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVEL 168

Query: 494 MSNVPFY-----------LKRGETSYGGMQLVDGIVFDGLT---DVYNKFH----MGNCA 619
           MS+VP             L + ++    + L+    F+ L       ++F     MG+ A
Sbjct: 169 MSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSA 228

Query: 620 ENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           +  A    ++R +QDEYA+ S+  +  A + +  + ++VP  VP K
Sbjct: 229 DRLAAAFAVSRLEQDEYALRSHSLAKKAQD-EGLLSDVVPFKVPGK 273


>BC030824-1|AAH30824.1|  475|Homo sapiens hydroxyacyl-Coenzyme A
           dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenz
           protein.
          Length = 475

 Score = 74.1 bits (174), Expect = 5e-13
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
 Frame = +2

Query: 134 KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVC 313
           K ++  VV+   VRTP                    +   + R  +PKE +  +  G V 
Sbjct: 49  KPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVI 108

Query: 314 SANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 493
                   AR+A + AG    T   TV   C S  +++      + +G  D+I+AGG+E 
Sbjct: 109 QEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVEL 168

Query: 494 MSNVPFY-----------LKRGETSYGGMQLVDGIVFDGLT---DVYNKFH----MGNCA 619
           MS+VP             L + ++    + L+    F+ L       ++F     MG+ A
Sbjct: 169 MSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSA 228

Query: 620 ENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           +  A    ++R +QDEYA+ S+  +  A + +  + ++VP  VP K
Sbjct: 229 DRLAAAFAVSRLEQDEYALRSHSLAKKAQD-EGLLSDVVPFKVPGK 273


>BC017564-1|AAH17564.1|  475|Homo sapiens hydroxyacyl-Coenzyme A
           dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenz
           protein.
          Length = 475

 Score = 74.1 bits (174), Expect = 5e-13
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
 Frame = +2

Query: 134 KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVC 313
           K ++  VV+   VRTP                    +   + R  +PKE +  +  G V 
Sbjct: 49  KPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVI 108

Query: 314 SANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 493
                   AR+A + AG    T   TV   C S  +++      + +G  D+I+AGG+E 
Sbjct: 109 QEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVEL 168

Query: 494 MSNVPFY-----------LKRGETSYGGMQLVDGIVFDGLT---DVYNKFH----MGNCA 619
           MS+VP             L + ++    + L+    F+ L       ++F     MG+ A
Sbjct: 169 MSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSA 228

Query: 620 ENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           +  A    ++R +QDEYA+ S+  +  A + +  + ++VP  VP K
Sbjct: 229 DRLAAAFAVSRLEQDEYALRSHSLAKKAQD-EGLLSDVVPFKVPGK 273


>AC010896-2|AAY14644.1|  474|Homo sapiens unknown protein.
          Length = 474

 Score = 74.1 bits (174), Expect = 5e-13
 Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 18/226 (7%)
 Frame = +2

Query: 134 KVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVC 313
           K ++  VV+   VRTP                    +   + R  +PKE +  +  G V 
Sbjct: 48  KPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVI 107

Query: 314 SANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMES 493
                   AR+A + AG    T   TV   C S  +++      + +G  D+I+AGG+E 
Sbjct: 108 QEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVEL 167

Query: 494 MSNVPFY-----------LKRGETSYGGMQLVDGIVFDGLT---DVYNKFH----MGNCA 619
           MS+VP             L + ++    + L+    F+ L       ++F     MG+ A
Sbjct: 168 MSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELPAVSEFSTSETMGHSA 227

Query: 620 ENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           +  A    ++R +QDEYA+ S+  +  A + +  + ++VP  VP K
Sbjct: 228 DRLAAAFAVSRLEQDEYALRSHSLAKKAQD-EGLLSDVVPFKVPGK 272


>BC014474-1|AAH14474.1|  331|Homo sapiens ACAA1 protein protein.
          Length = 331

 Score = 53.6 bits (123), Expect(2) = 1e-11
 Identities = 24/84 (28%), Positives = 49/84 (58%)
 Frame = +2

Query: 242 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 421
           + A ++   +  E++ ++ +GNV     G   AR A   + +P++   +TVN+ C+SG++
Sbjct: 69  MTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 128

Query: 422 SIMLAAQGLQTGAQDIILAGGMES 493
           ++   A G++ G+ DI +A G+ S
Sbjct: 129 AVASIAGGIRNGSYDIGMACGITS 152



 Score = 36.3 bits (80), Expect(2) = 1e-11
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +2

Query: 608 GNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPV 742
           G  +EN A++  I+R+ QD +A+ S +++A A     F  E+VPV
Sbjct: 149 GITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPV 193


>X51460-1|CAA35825.1|  326|Homo sapiens 3-oxoacyl-CoA thiolase
           protein.
          Length = 326

 Score = 64.1 bits (149), Expect = 5e-10
 Identities = 43/135 (31%), Positives = 74/135 (54%)
 Frame = +2

Query: 338 ARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPFYL 517
           AR A   + +P++   +TVN+ C+SG++++   A G++ G+ DI +A G+ESMS      
Sbjct: 3   ARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMS----LA 58

Query: 518 KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSA 697
            RG       +L++    +   D      MG  +EN A++  I+R+ QD +A+ S +++A
Sbjct: 59  DRGNPGNITSRLMEK---EKARDCL--IPMGITSENVAERFGISREKQDTFALASQQKAA 113

Query: 698 AAYEAKAFVDELVPV 742
            A     F  E+VPV
Sbjct: 114 RAQSKGCFQAEIVPV 128


>U49441-1|AAB09424.1|  224|Homo sapiens mitochondrial trifunctional
           protein beta subunit protein.
          Length = 224

 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
 Frame = +2

Query: 338 ARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVPFY- 514
           AR+A + AG    T   TV   C S  +++  A   + +G  D+++AGG+E MS+VP   
Sbjct: 15  AREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAGGVELMSDVPIRH 74

Query: 515 ----------LKRGETSYGGMQLVDGIVFDGLT-------DVYNKFHMGNCAENTAKKLQ 643
                     L + +T    + L+     + L+       +      MG+ A+  A    
Sbjct: 75  SRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPELPAVAEFSTNETMGHSADRLAAAFA 134

Query: 644 ITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPXK 757
           ++R +QDEYA+ S+  +  A + +  + ++VP  VP K
Sbjct: 135 VSRMEQDEYALRSHSLAKKAQD-EGHLSDIVPFKVPGK 171


>D86850-1|BAA22061.1|  410|Homo sapiens 3-ketoacyl-CoA thiolase
           beta-subunit of mitochondrial trifunctional protein
           protein.
          Length = 410

 Score = 52.4 bits (120), Expect = 2e-06
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
 Frame = +2

Query: 269 IPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGL 448
           + + + KE   G  CS ++  A    A + AG    T   TV   C S  +++      +
Sbjct: 30  VSQTQYKECCGGGWCSHSIF-AVWHFAALGAGFSDKTPAHTVTMACISANQAMTTGVGLI 88

Query: 449 QTGAQDIILAGGMESMSNVPFY-----------LKRGETSYGGMQLVDGIVFDGLT---D 586
            +G  D+I+AGG+E MS+VP             L + ++    + L+    F+ L     
Sbjct: 89  ASGQCDVIVAGGVELMSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPELP 148

Query: 587 VYNKFH----MGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPX 754
             ++F     MG+ A+  A    ++R +QDEYA+ S+  +  A + +  + ++VP  VP 
Sbjct: 149 AVSEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQD-EGLLSDVVPFKVPG 207

Query: 755 K 757
           K
Sbjct: 208 K 208


>AF035295-1|AAB88181.1|  132|Homo sapiens protein ( Homo sapiens
           clone 23623 mRNA, partial cds. ).
          Length = 132

 Score = 40.7 bits (91), Expect = 0.006
 Identities = 16/62 (25%), Positives = 36/62 (58%)
 Frame = +2

Query: 242 VNAAIERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMK 421
           + A ++   +  E++ ++ +GNV     G   AR A   + +P++   +TVN+ C+SG++
Sbjct: 48  MTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQ 107

Query: 422 SI 427
           ++
Sbjct: 108 AV 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,648,467
Number of Sequences: 237096
Number of extensions: 2167784
Number of successful extensions: 7906
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 7721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7899
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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