Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L19
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921... 165 3e-41
02_04_0020 - 18956282-18956461,18956591-18956740,18957934-189580... 36 0.053
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 34 0.12
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 33 0.37
04_04_1653 + 35070026-35070064,35070358-35070408,35070490-350705... 32 0.49
04_03_0797 + 19744815-19745030,19745190-19745273,19745375-197454... 32 0.65
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617... 29 6.1
02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712... 29 6.1
>02_05_1142 -
34391144-34391590,34391715-34391904,34392058-34392128,
34392403-34392515,34392656-34392749,34392843-34392908,
34393120-34393282,34393441-34393547,34393918-34394115,
34394204-34394329,34394800-34394904,34395056-34395098,
34395334-34395391,34395479-34395659,34395751-34395917,
34396010-34396249,34396341-34396781,34397147-34397272,
34397457-34397561,34397935-34398002,34398169-34398272,
34398856-34399008,34399472-34399570,34399919-34400046,
34400149-34400300,34400423-34400502
Length = 1274
Score = 165 bits (402), Expect = 3e-41
Identities = 89/234 (38%), Positives = 127/234 (54%), Gaps = 1/234 (0%)
Frame = +1
Query: 139 MNSSHNKHSIPI-DILDDLCSRFIINLPAEDRGNLVRICFQIELAHWFYLDYYCTDESKK 315
+N S ++ +P ++LDDLCSRF++N+P ED + RI F +E AHWFY D + +
Sbjct: 7 LNRSSSRGQLPPQELLDDLCSRFVLNVPKEDLESFERILFLLEQAHWFYEDN-SVEHNPS 65
Query: 316 VYPCGIREFAAHIFQHVPQLREHVSSLDAVLDNWREYKQTVPTYGAIXXXXXXSHVLLVQ 495
+ ++F +F LR + + LD + ++ YK VP GAI LLV+
Sbjct: 66 LKSLSFKDFTTLMFNSCAALRPYRAHLDDIYKDFTHYKFRVPVCGAIILDDTYEKCLLVK 125
Query: 496 SYWTKASWGFPKGKVNEDEEPWKCATREVLEETGFDISNLINKNDYIEAVTHDQIARLYI 675
+ + ASW FP+GK ++DEE CA REVLEETG D+S L+ DYIE Q RLYI
Sbjct: 126 GWKSSASWSFPRGKRSKDEEDHTCAVREVLEETGCDVSKLLKLEDYIEVSMWQQRVRLYI 185
Query: 676 IGNIPRDTKFQPRTRNEIKACEWFPLADLPANKKDMTPKVKMGVSPNAXFMVLP 837
I + DT F P+T+ EI W + +L D + GV+ +MV P
Sbjct: 186 ITGVKGDTVFAPQTKKEISEISWHNIDELLPAGDD---AISRGVNGMKLYMVAP 236
>02_04_0020 -
18956282-18956461,18956591-18956740,18957934-18958017,
18958283-18958403,18958525-18958604
Length = 204
Score = 35.5 bits (78), Expect = 0.053
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 484 LLVQSYWTKASWGFPKGKVNEDEEPWKCATREVLEETGFDISNLINK 624
+L+ S +A FPKG +DEE ++ A+RE +EE G + ++N+
Sbjct: 52 VLMVSTPNRADMVFPKGGWEDDEEVYEAASREAMEEAG--VKGIVNR 96
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 34.3 bits (75), Expect = 0.12
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = +1
Query: 481 VLLVQSYWTKAS----WGFPKGKVNEDEEPWKCATREVLEETGFDISNLINKNDYIEA-V 645
VL+VQ + +S W P G + EE + ATREV EETG D + ++ + A
Sbjct: 231 VLVVQEKYCGSSLDGAWKLPTGFILASEEIFTGATREVKEETGVD-TEFVDVVAFRHAHN 289
Query: 646 THDQIARLYIIGNIPRDTKFQPRTRNEIKACEWFPLAD 759
Q + L+ I + + EI+A +W PL +
Sbjct: 290 VAFQKSDLFFICMLRPTSNNIKIDETEIQAAKWMPLEE 327
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 32.7 bits (71), Expect = 0.37
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = +1
Query: 517 WGFPKGKVNEDEEPWKCATREVLEETGFD---ISNLINKNDYIEAVTHDQIARLYIIGNI 687
W FP G V E+ A REV EETG D + L + + + + I+ +
Sbjct: 147 WKFPTGVVEPGEDINLGAVREVKEETGIDTEFVEVLAFRQSHKAFFDKSDLFFVCILRPL 206
Query: 688 PRDTKFQPRTRNEIKACEWFPLADLPA 768
D Q +EI+A +W P+ + A
Sbjct: 207 SFDITKQD---SEIEAAQWMPVEEFAA 230
>04_04_1653 +
35070026-35070064,35070358-35070408,35070490-35070582,
35070758-35070855,35072437-35072551,35072628-35072720
Length = 162
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 514 SWGFPKGKVNEDEEPWKCATREVLEETGFDISNLI 618
+W P+G ++ E+P + A RE+ EETG + ++
Sbjct: 25 TWQMPQGGIDAGEDPREAAFRELREETGVTSAEMV 59
>04_03_0797 +
19744815-19745030,19745190-19745273,19745375-19745473,
19745588-19745695,19747332-19747700
Length = 291
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 484 LLVQSYWTKASWGFPKGKVNEDEEPWKCATREVLEETG 597
+L+ S +A FPKG +DE+ ++ A RE +EE G
Sbjct: 57 VLMVSTPNRADLVFPKGGWEDDEDVYEAACREAMEEAG 94
>07_01_0793 -
6169661-6169936,6170942-6171025,6171473-6171590,
6172917-6172987
Length = 182
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 523 FPKGKVNEDEEPWKCATREVLEETGF--DISNLINKNDYIEAVTH 651
FPKG DE + A RE +EE G D+ L+ D+ ++ TH
Sbjct: 61 FPKGGWENDETVEEAAAREAIEEAGVRGDLVQLLGFYDF-KSKTH 104
>02_02_0139 +
7122880-7122979,7123328-7123560,7123961-7124032,
7124257-7124334,7124529-7124579,7124654-7124703,
7124807-7124915,7125023-7125223
Length = 297
Score = 28.7 bits (61), Expect = 6.1
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 517 WGFPKGKVNEDEEPWKCATREVLEETG---FDISNL---INKNDYIEAVTHDQIARLYII 678
W P G +++ E+ + A REV EETG F I + + + V D+ L+I
Sbjct: 152 WKIPTGFIDKFEDLFSGAIREVREETGNSTFQIESCFLDVVAFRHAHQVLFDKSDILFIC 211
Query: 679 GNIPRDTKFQPRTRNEIKACEWFPLAD 759
P + +EI+A W P+ +
Sbjct: 212 TLKPLSSDIS-IDESEIEAARWMPVEE 237
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,222,678
Number of Sequences: 37544
Number of extensions: 428537
Number of successful extensions: 1163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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