Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L19
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   8.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   8.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 680 EIFPETQSSNLAHETRSKRASGSHWRIC 763
           E  P+T SSN + E  SK      WR+C
Sbjct: 81  EKLPKT-SSNASVEPDSKVTYSGLWRVC 107


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 97  LDFKLTIT*QNCWKAXVWLNQNK*LFWMLLEF 2
           +D K  I   NCW   +W + +  L W   EF
Sbjct: 45  VDEKNQILTTNCWVTQIWTDHH--LKWNASEF 74


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 254 KHILTRFPLSSAGRFIMKRLQRSSN 180
           KH + +  LS   RF+ +RL++ +N
Sbjct: 106 KHAVHKEQLSREQRFLRRRLEQLTN 130


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 702 LCVSGNISNNVQSSDLIVCYG 640
           + VSG+  +N+  S +I C G
Sbjct: 230 MVVSGSKGSNINISQVIACVG 250


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 357 ENMCCKLSNTTGVYFLRFISAVIIQIKPMS-QFDLE 253
           E  C K+S   G+       A+I+Q + M  + DLE
Sbjct: 282 EIQCVKISALKGINLRELTEAIIVQAELMDLKGDLE 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,535
Number of Sequences: 438
Number of extensions: 5024
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)