Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L18
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    27   0.13 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   6.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +3

Query: 186 CEFEGEECKKG-NLLGVCTNIRKCQSALND-IRNR--KSPQICSFDNAD 320
           CEF+G +C  G N    CT   +C     D I N    +P+ C FD  D
Sbjct: 511 CEFDGNDCSLGINPWANCTASTRCWEVFMDGICNEDCNNPE-CLFDGRD 558


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 600 SAYCG*SPR*ARRPFHTDTRAALDI 526
           S + G +PR  RR   T TRA LD+
Sbjct: 117 SYFAGVNPRKQRRERTTFTRAQLDL 141


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/29 (27%), Positives = 12/29 (41%)
 Frame = -1

Query: 522 YICPMPSARSWETSDPPVHPRISCRHCWT 436
           Y  P P+  +W T   P        +CW+
Sbjct: 297 YSAPGPTYSTWSTVQTPTTVMSPTINCWS 325


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 374 NNASYAEFYHNGV 412
           NNA + EF H+G+
Sbjct: 65  NNAEFPEFVHSGM 77


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 374 NNASYAEFYHNGV 412
           NNA + EF H+G+
Sbjct: 65  NNAEFPEFVHSGM 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,529
Number of Sequences: 336
Number of extensions: 3816
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)