Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L17
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 1.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 26 3.4
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 4.5
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce... 25 4.5
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 6.0
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 7.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.9
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 7.9
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 7.9
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 1.1
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 169 RKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASANITQGGIGFTFVNLRMKSERGNK 348
R+ V NL L PST S Q + + D+TH+ S + +G + + + + + +
Sbjct: 363 RRSVPNLISSLGTSPSTF--SSQFLKSTDRTHSFTSKLQSFNPVGTSLLASSLGTSQEDS 420
Query: 349 LNYDV 363
+NYD+
Sbjct: 421 VNYDI 425
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +2
Query: 98 YSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASPFRA 241
Y+ ++ +WS + +TP SA F T YP +S + A
Sbjct: 116 YTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYPATSSESSSSYPA 163
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 4.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 215 PPLASPFRAFWPMIRLTPPLPLTSLKVESDSLSSIS 322
PP SP +P+ + P+P + +D +S S
Sbjct: 470 PPSPSPISPSFPLHEIQSPMPNRRMAASADDISQTS 505
>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 223 GKSIQGILAYDKTHTTASANITQGGIGFTFV 315
G I GI Y + HT A + G GF FV
Sbjct: 63 GLPIMGIDVYTQEHTKAWGSKIAGADGFVFV 93
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 6.0
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = +1
Query: 250 YDKTHTTASANITQGGIGFTFVNLRMKSERGNKLNYDVYIYV*ILFEQSIN 402
Y K +T Q IG N+ E G + D+YI +L E S N
Sbjct: 584 YSKAYTCYKIAYEQSSIGMGLWNMAYMHEYGIGRDQDIYIARRLLDELSSN 634
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 7.9
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 179 LRTFITFYPRCHPPLASPFRAFWPMIRLTPPLPLTSLKVE 298
LRT Y RC PP+ ++ W I PL S+KVE
Sbjct: 53 LRTKFNTYDRCIPPMK---KSLWGWIE-----PLWSIKVE 84
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 7.9
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +2
Query: 95 TYSSVPISIDLWSTITTLSTTPSYSAKGLRTFITFYPRCHPPLASPFRAFWPMIRLTPPL 274
T SS P+S +T T+ S+TP S T PL+S A T
Sbjct: 286 TPSSTPLSSANSTTATSASSTPLTSVNSTTT----TSASSTPLSSVSSANSTTATSTSST 341
Query: 275 PLTSL-KVESDSLSSISV*RANAETSLITMST 367
PL+S+ + S SS + N+ T+ ST
Sbjct: 342 PLSSVNSTTATSASSTPLTSVNSTTATSASST 373
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 229 SIQGILAYDKTHTTASANITQGGIGFTFVNLR 324
SI+GI YD A + T GGIG N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 69 RCGDRRMRSPIRRYQYQ*TYGLPSQR 146
+C RR S Y Y+ TYG P +R
Sbjct: 25 KCDQRRPCSNCIAYNYECTYGQPFKR 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,346
Number of Sequences: 5004
Number of extensions: 29890
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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