Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L17
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    28   4.5  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     28   4.5  
01_03_0005 + 11568545-11569119,11569179-11569191                       28   4.5  
06_01_0001 - 18456-18521,18692-18874,19046-19153,19337-19396,197...    27   6.0  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   6.0  

>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 212 HPPLASPFRAFWPMIRLTPPLPLTSLKV 295
           HP + +  R+FWP   LT  L L  L V
Sbjct: 320 HPVVTALLRSFWPQFLLTAMLGLAHLSV 347


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 139 HNAKYDSKLFRKRVENLHYVL 201
           HNAK+ ++++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 215 PPLASPFRAFWPMIRLTPPLPLTSLKVESDSLSSISV*RANAETSLIT 358
           PP  +PF  ++P    +PP P  S       +S+IS   A   T L+T
Sbjct: 140 PPPPNPFLPYFPFYYYSPPPPFYSSGSSVAGVSAISSAAAATFTLLLT 187


>06_01_0001 -
           18456-18521,18692-18874,19046-19153,19337-19396,
           19755-19937,20109-20291,20816-20998,21170-21352,
           21524-21581,21878-21935,22586-22643,22938-22995,
           23292-23349,23998-24007
          Length = 482

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +2

Query: 239 AFWPM-----IRLTPPLPLTSLKVESDSLSSISV*RANAETS 349
           A WPM     I   PPL + SLK ES+ L +I +   + +TS
Sbjct: 340 ASWPMVISRKISSVPPLQIQSLKGESNVLCAIPILTTSLKTS 381


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = +1

Query: 106 GTNINRPMVYHHNAKYDSKLFRKRVENLHYVLPQVPSTIGKSIQGILAYDKTHTTASANI 285
           GT+ N+ ++       D     KR+ ++HY+   +PS     +  +   DK H      +
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGMDKNHPFGIGQM 301

Query: 286 TQG 294
             G
Sbjct: 302 ENG 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,051,776
Number of Sequences: 37544
Number of extensions: 194895
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)