Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L15
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    30   0.30 
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   3.7  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.5  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    26   6.5  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    26   6.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   8.6  

>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 625 FNQFSFIILYHIICKNYTKLSTIT 696
           F Q S   LYH++C N  K +TIT
Sbjct: 584 FQQLSLSRLYHVLCSNRNKKNTIT 607


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 481 TFKMKTSKCIIGIITVSRELFLKISHYAFS*HLKTVYYSTFI 606
           ++KMK S  I+G+I ++  LFL +S+Y F    K   Y+ F+
Sbjct: 522 SYKMKLS-IILGVIHMTFCLFLSLSNYRFF-KRKLDIYAVFV 561


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 183 SIVSVVGGLRSLALAPTWSKRQLSFA-DQQGSGQNQHKYQS 64
           +I + +  ++ L L P WSKR++ +  D+   G  Q  Y S
Sbjct: 250 NIAAAIKAVQELPLNPKWSKRRIYYGRDRCAVGLKQPAYFS 290


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 662 YVKTIQNYRPLLTYYNVDHQIKI 730
           Y K + NY  +L Y+N  HQI +
Sbjct: 58  YQKMLGNYPEVLPYFNKAHQISL 80


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 577 LKTVYYST--FIL-LCY*YFNQFSFIILYHIICKNYTKLSTITNIL 705
           +K   YST  FI  +CY   N  + I+L    C+N T +ST   IL
Sbjct: 162 MKNNRYSTNPFIYGMCYIIRNNANRILLESCYCENSTGMSTCPRIL 207


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +2

Query: 563  LFLSI*KQFIIQHLYYFVTNILINFHLLYYTT*YVKTI 676
            LF+ I  ++ +Q  +  VT+I + + LLY +T Y K++
Sbjct: 1441 LFVGI-NRYYLQRQHVDVTDIPMYYELLYPSTDYTKSV 1477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,945
Number of Sequences: 5004
Number of extensions: 59297
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)