Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L13
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 351 3e-97
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 350 6e-97
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 350 8e-97
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 30 2.3
12_02_0735 - 22636835-22639502,22639755-22640734 29 3.0
11_01_0462 + 3574200-3574552,3574619-3574760,3574867-3574878 29 4.0
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 4.0
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.3
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 7.0
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.0
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 9.3
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 9.3
04_04_1303 - 32487174-32487871,32488583-32489123 28 9.3
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 351 bits (864), Expect = 3e-97
Identities = 156/240 (65%), Positives = 192/240 (80%)
Frame = +2
Query: 38 MARGPXQHLXRXNAPKAWMLDKLGGVXAPSPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG +HL R NAPK WMLDKLGG AP PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 398 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 577
+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 578 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 757
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPK 240
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 350 bits (861), Expect = 6e-97
Identities = 155/240 (64%), Positives = 192/240 (80%)
Frame = +2
Query: 38 MARGPXQHLXRXNAPKAWMLDKLGGVXAPSPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG +HL R NAPK WMLDKLGG AP PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 218 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 397
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 398 YKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNL 577
+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNV 180
Query: 578 CMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 757
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+
Sbjct: 181 VMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPK 240
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 350 bits (860), Expect = 8e-97
Identities = 159/246 (64%), Positives = 192/246 (78%)
Frame = +2
Query: 20 LSSLSNMARGPXQHLXRXNAPKAWMLDKLGGVXAPSPSTGPHKLRECLPLVIFLRNRLKY 199
L S ARG +HL R NAP WMLDKLGG AP PS+GPHK RECLPL++ LRNRLKY
Sbjct: 11 LDQRSFWARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKY 70
Query: 200 ALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 379
ALT EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I
Sbjct: 71 ALTYREVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSI 130
Query: 380 TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 559
E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIK
Sbjct: 131 KDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIK 190
Query: 560 FESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKA 739
F+ GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NVF IGK K
Sbjct: 191 FDVGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKP 250
Query: 740 YISLPR 757
++SLP+
Sbjct: 251 WVSLPK 256
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 717 MNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 595
+N +F L V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 729 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 634
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>11_01_0462 + 3574200-3574552,3574619-3574760,3574867-3574878
Length = 168
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +1
Query: 70 LXRSQSMDVGQTWRCVCTEPVNRSPQVARVLAPG-DFPEESS 192
L R + +G TW C EP ++ L PG D PE S
Sbjct: 116 LLRRYKLALGFTWGCDAVEPCGDRRRMVSALQPGTDLPEAMS 157
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 729 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 634
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +3
Query: 615 APSCPARDI--PAPSTLCTSRTPRDTPSP 695
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 696 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 565
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 332 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 436
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 692 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 597
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 458 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 592
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>04_04_1303 - 32487174-32487871,32488583-32489123
Length = 412
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 700 PRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPR 566
P GE ++R VL V AG++ G H P + R T+ P+
Sbjct: 170 PGGEEIARSVLRVR----AGLACRGTQAFHPPDIHRGRAATRTPK 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,314,781
Number of Sequences: 37544
Number of extensions: 539088
Number of successful extensions: 1687
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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