Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L13
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   330   5e-91
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    31   0.89 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.6  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.6  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   6.3  
Z77663-8|CAB01205.2|  337|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  330 bits (812), Expect = 5e-91
 Identities = 154/237 (64%), Positives = 183/237 (77%)
 Frame = +2

Query: 44  RGPXQHLXRXNAPKAWMLDKLGGVXAPSPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
           RGP +HL R  AP  WMLDKLGGV A  P+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 224 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 403
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 404 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 583
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 584 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 754
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLP 238


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 607 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHXGVH 744
           A  HH    E      H  H G HGTH  H          GH G H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEH 509



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
 Frame = +1

Query: 472 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 648
           HH      +  +  H P  H ++ ++G H     E  + H     G  G H         
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554

Query: 649 LRHCAHQGLHGTHLRHEVEQRVHNRQGHXGVH 744
               AH G HG H         H   G  GVH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH 586



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +1

Query: 655 HCAHQGLHGTHLRHEVEQR-VHNRQGHXGVH 744
           H AH   HG H RH  E    H+   H G H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH 422



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +1

Query: 616 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHXGVH 744
           HHR   E        AH G HGTH  H  E   H+   H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +1

Query: 586 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHXGVH 744
           HG    G+ G H     T   L H  H G HGTH  H       +  GH G H
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH--HGAHHSPAH-HGHHGAH 692



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +1

Query: 613 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHXGVH 744
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
 Frame = +1

Query: 472 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 639
           HH      +  +  H P  H ++  +G H V       + HG       GHH        
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614

Query: 640 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HXGVH 744
                + AH G HG H  H      H   G  H G H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH 651


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 356 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 487
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 574 LVYDHGRP*LGACGHHRVPRETSRLLRH 657
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 574 LVYDHGRP*LGACGHHRVPRETSRLLRH 657
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 513  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 349
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z77663-8|CAB01205.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F4.9 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 6   RFFLVFHPCPTWRAALISIXSAXTLP 83
           R++++FHP PT R ALI I    ++P
Sbjct: 115 RYYILFHPAPT-RKALIVILMFISIP 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,709,989
Number of Sequences: 27780
Number of extensions: 422406
Number of successful extensions: 1290
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)