Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L12
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   1.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   2.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   3.5  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    26   4.7  
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    25   6.2  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    25   8.2  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   8.2  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 408 SPRYCPLCASNLRRWPHCA 464
           SPRYCP   + + R+PH A
Sbjct: 290 SPRYCPSLEAKVTRFPHKA 308


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 178 YRGPLSLAPGQPANVLGADGRPLDTLDVNLDRAAHYTSKALGVHLLKKRSAVIAPISTV 354
           YR     +P QP + LG +    D L   L+R++H         LL   + +  P+S++
Sbjct: 770 YRFVFKFSPSQPLSSLGKNKEKYDAL---LERSSHGVLPVQSKMLLYNSNHISCPLSSI 825


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 346 STVAVAHSPLITPAAHIAYSAPLATAHYA 432
           S + ++ SP  TP+ ++  S P A+ HY+
Sbjct: 159 SRIGLSSSPTNTPSPNLPVSQPSASPHYS 187


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 126 GDGRHESAIYGRQHAGQHHQLHHSVSGLCCVCNS 25
           GDG    +IYG +   ++ +L H   GL  + N+
Sbjct: 93  GDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANA 126


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 136 PLAYTAPLIAPFGNYRGPLSLAPGQPANVLGADGRPLDTLDVNLDRAAHYTSKAL 300
           P+ + A + A FGN   PL+ +   P  +L    +P+    +    AA +TS  L
Sbjct: 36  PIEFQAVVFAGFGNSLYPLTGSDALPKALLPIGNKPMLHYPLYWLEAAGFTSAIL 90


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 461 CTGRLIELLLSRQNVNIRNKIND 529
           C  +L++ L+   N+NI +++ND
Sbjct: 205 CRNKLVQWLIKINNMNITDQLND 227


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 99  YGRQH-AGQHHQLHHSVSGLCCV-CNSQ 22
           + RQH   +H QLH  +    CV CN +
Sbjct: 609 FARQHDKRRHEQLHTGIKAFACVTCNQR 636


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,419
Number of Sequences: 5004
Number of extensions: 31770
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)