Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L12
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 30 1.2
08_02_1005 + 23468230-23468994 30 1.6
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 29 2.1
04_04_0095 - 22775340-22776017 29 2.7
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 2.7
07_01_0534 - 3949551-3950350,3950997-3951006 29 3.6
06_03_0404 - 20460555-20462135 29 3.6
06_01_0866 + 6582131-6583294 29 3.6
01_06_1531 + 38024757-38024790,38025592-38025803,38026111-380262... 29 3.6
08_02_1316 - 26088302-26088405,26089203-26089317 28 6.3
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 28 6.3
03_01_0217 - 1712979-1713794 28 6.3
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 28 6.3
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 27 8.4
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 27 8.4
05_05_0037 - 21765215-21765348,21765871-21766018 27 8.4
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 27 8.4
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 129 VGDGRHESAIYGRQHAGQHHQLHHSVSGLCCVCNS 25
+GDGR +IYG + A ++ ++ H+ GL + N+
Sbjct: 123 LGDGRGGESIYGTKFADENFKIKHTGPGLLSMANA 157
>08_02_1005 + 23468230-23468994
Length = 254
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +1
Query: 52 YRMMKLVVLSCMLAAVYG----GLVAPITYTAPLAYTAPLIAPFGNYRGPLSLA 201
++++ ++ C +AA+ G G AP+ LA AP + FG+ RG LSLA
Sbjct: 46 FKLLPMLTTGCKMAALLGRHSGGRAAPL-----LADHAPTVTLFGHRRGRLSLA 94
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 220 VLGADGRPLDTLDVNLDR-AAHYTSK 294
V+GADG+P + D++LDR +A++T +
Sbjct: 285 VVGADGKPTPSFDIHLDRLSANWTRR 310
>04_04_0095 - 22775340-22776017
Length = 225
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 270 VQVNVESVEGPAVGAEDVGGLAGGKGQRPSVVAERRNQRCGVCKR---CGVGDGRHESAI 100
++V V V G E GG GG R V A +R V R CG GDG + A
Sbjct: 14 LEVKVVRVAGVEARPEGGGGGGGGLFVRYYVPAGDGKRRIRVDTREVPCGGGDGEEDGAF 73
Query: 99 YG 94
+G
Sbjct: 74 WG 75
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -3
Query: 207 AGGKGQRPSVVAERRNQRCGVCKRCGVGDGR 115
AGG A R Q+C CKR GDGR
Sbjct: 408 AGGPWTWRESPASRAMQKCPACKRTHTGDGR 438
>07_01_0534 - 3949551-3950350,3950997-3951006
Length = 269
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = -1
Query: 374 SGECATATVLMGAMTAERFFNRWTPRALLV*CAARSKLTSRVSRGLPSAPRTLAGWPGAR 195
SG A + G TA RW PR + A S T +R + WP AR
Sbjct: 48 SGALAAGSGRGGVGTASARRGRWRPRQAVAGATAASGATVEQARAAAAGSEARLLWPAAR 107
>06_03_0404 - 20460555-20462135
Length = 526
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 27 NYTRNTDHLQNDEAGGVVLHVGGRIWRTR--GAHHLHRTACIHRTVDCA 167
NY R+ D +N AGGV + GR+W + GA + R A VD +
Sbjct: 463 NY-RDLDIGENAVAGGVTSYENGRVWGEKYFGAANFRRLALTKGKVDAS 510
>06_01_0866 + 6582131-6583294
Length = 387
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -3
Query: 222 DVGGLAGGKGQRPS----VVAERRNQRCGVCKRCGVGDG 118
DV G GG GQRP+ ++ ++ Q C + G G G
Sbjct: 2 DVTGDGGGGGQRPNFPLQLLGKKEEQTCSTSQTAGAGGG 40
>01_06_1531 +
38024757-38024790,38025592-38025803,38026111-38026248,
38026405-38026449,38026499-38026591,38028072-38028815
Length = 421
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = -3
Query: 240 PAVGAEDVGGLAGGKGQRPSVVAERRNQRCGVCKRCGVGDGRHE----SAIYGRQHAGQH 73
PA E+ GG GG +V + R R + G GD E +A HA +H
Sbjct: 189 PAAAGEEEGG--GGVFFCVAVTSRGRTDRLSYFQAEGDGDDAEEVARATAALCLDHAPEH 246
Query: 72 HQLHH 58
H HH
Sbjct: 247 HHWHH 251
>08_02_1316 - 26088302-26088405,26089203-26089317
Length = 72
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 97 RPPTCRTTPPASSFCKWS 44
RP +CRT+P AS C++S
Sbjct: 7 RPASCRTSPAASPCCEYS 24
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 325 SASSTGGRRELCWCSAPR 272
S SS GGRR WC+ PR
Sbjct: 335 STSSFGGRRRGSWCTPPR 352
>03_01_0217 - 1712979-1713794
Length = 271
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 216 GGLAGGKGQRPSVVAERRNQRCGVCKRCG 130
GG GG+G +R ++CG KRCG
Sbjct: 161 GGGGGGEGGEHCSRPAKRRRKCGEEKRCG 189
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 262 NLDRAAHYTSKALGVHLLKKR 324
NLDRA + KA G+ LL+KR
Sbjct: 223 NLDRAISFYEKACGMELLRKR 243
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -3
Query: 279 RRAVQVNVESVEGPAVGAEDV----GGLAGGKGQRPSVVAERRNQRCGVCKRCGVGDGRH 112
RR ++ E +E + E+ GG KGQ VA RR + + G G G+
Sbjct: 682 RRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRRAKSMKASGKRGAGTGKG 741
Query: 111 ESAIYGRQHAGQ 76
++ +QH+G+
Sbjct: 742 KNDKKAKQHSGK 753
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 231 GAEDVGGLAGGKGQRPSVVAERRNQRCGVCKR 136
GA+++ G QR +V+ R + CGVCKR
Sbjct: 742 GADNIRSDIGALAQRYTVID--REEECGVCKR 771
>05_05_0037 - 21765215-21765348,21765871-21766018
Length = 93
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 231 GAEDVGGLAGGKGQRPSVVAE-RRNQRCGVCKRCGVGDGRHESAI 100
GA G GG G V+ RR CG C+ G H+ A+
Sbjct: 9 GAASASGPGGGGGGESVVIDYGRRRTACGYCRSTGQTSISHDMAL 53
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.5 bits (58), Expect = 8.4
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Frame = +1
Query: 82 CMLAAVYGGLVAPITYTA-PLAYTAPLIAPFGNYRGPLSLAPGQPANVLGA-DGRPLDTL 255
C A+ GG P T T P +PLIA + R L + Q A G G PL T
Sbjct: 191 CSDASRGGGGSTPRTTTKLPKPPPSPLIARTNSTR-LLGSSNTQWALSPGRRSGSPLKTT 249
Query: 256 DVNLDRAAHYTSKALGV---HLLKKRSAVIAPISTVAVAHSPLITPAA 390
+ T +G+ HL +R A A +T A A + L +PA+
Sbjct: 250 LATVPELKGKTKSLIGLGWGHLFSRRKAAAAETATGAQATATLSSPAS 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,002,011
Number of Sequences: 37544
Number of extensions: 286121
Number of successful extensions: 1318
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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