Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L10
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    91   8e-20
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    89   4e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    86   3e-18
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.28 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.1  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    27   1.5  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    26   3.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   4.6  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.6  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   4.6  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   6.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.1  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   8.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.1  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 91.1 bits (216), Expect = 8e-20
 Identities = 39/69 (56%), Positives = 58/69 (84%)
 Frame = +3

Query: 30  MRYVAASLLAVLGGKPTPAAADVEXXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 209
           M+Y+AA LL  +GGK +P+A+D+E  LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 210 KLSSMPVGG 236
           KL+++P GG
Sbjct: 61  KLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 88.6 bits (210), Expect = 4e-19
 Identities = 39/69 (56%), Positives = 58/69 (84%)
 Frame = +3

Query: 30  MRYVAASLLAVLGGKPTPAAADVEXXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 209
           M+Y+AA LL  +GGK +P+A+D+E  LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 210 KLSSMPVGG 236
           KLS++P  G
Sbjct: 61  KLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 37/69 (53%), Positives = 58/69 (84%)
 Frame = +3

Query: 30  MRYVAASLLAVLGGKPTPAAADVEXXLSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 209
           M+Y+AA LL  +GGK +P+A+D+E  LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 210 KLSSMPVGG 236
           KL+++P GG
Sbjct: 61  KLATVPSGG 69


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = -2

Query: 235 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVG 74
           PPTG   S S P         + STS+P+    T  + + S  +PT     STS      
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT----TSTSCTTSTS 177

Query: 73  LPPSTASKDAAT 38
           +PP+  S   +T
Sbjct: 178 IPPTGGSSSLST 189



 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -2

Query: 235 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVG 74
           PPTG   S S P         + STS+P+    T  + + S+ +PT     +TS +   G
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTG 238



 Score = 25.8 bits (54), Expect = 3.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 202 PAAISCSTSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVGLPPSTASKDAAT 38
           P   + STS+P+    T  + + S+ +PT     STS      +PP+  S    T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPT----TSTSCTTSTSIPPTGNSTTPVT 302



 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -2

Query: 190 SCSTSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVGLPPSTASKDAAT 38
           S ST +   S  +  S S + S  + L   STS      +PP+  S   +T
Sbjct: 82  SASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLST 132


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -2

Query: 232 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSPSASIPTELRXXSTSAAAGVGLPPS 62
           PT    S+   +++  S+S P SS    +T  S S S+   T     STS++       S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261

Query: 61  TASKDAAT 38
           TAS  +++
Sbjct: 262 TASSSSSS 269


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 66  PAQPVKTRPRNAFFKAXLTRNV 1
           PA PVKT P  A ++   TRNV
Sbjct: 332 PAPPVKTSPHPASYRPQPTRNV 353


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -2

Query: 202 PAAISCSTSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVGLPPSTASKD 47
           PA++  +T   +   +T +  SPSA +       S   A G G PP   + D
Sbjct: 183 PASLKFATGAGIGLYLTIIGLSPSAGLGVIGHSSSDIVALG-GCPPEYLNAD 233


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 214 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVGLPPSTA 56
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 364 TKLYKSTRRWSLFQFMF 414
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 217 DSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVGLPPSTASKD 47
           D+ +RPA     T+   SS  T +S S   S   E     TSA        +T ++D
Sbjct: 185 DTSTRPANSQTPTTTRASSYTTLVSTSNQVSNEAEASAVETSANQAQNTEDATENED 241


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = -2

Query: 166 SSVITFLSFSPSASIPTELRXXSTSAAAGVGLPPST 59
           SSV T LS S S+SIP      S+SAAA   L  S+
Sbjct: 8   SSVDTSLSSSASSSIPAS----SSSAAASTSLSSSS 39


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = +1

Query: 25  KKCVTWPRLYWLCWV 69
           +K  +W R++W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 27   KMRYVAASLLAVLGGKPTPAAADVEXXLSSVGIEADGEKLKKVITEL-NGKDVEQ 188
            K+R +    +  L  + T  +   E    + G+E+ G+K K ++ E  NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 136 PSASIPTELRXXSTSAAAGVGLPPSTAS 53
           PS SI  +L     ++ +G+G PPS  S
Sbjct: 188 PSLSIEAKLSNIVNASKSGIGPPPSLLS 215


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 181 TSLPLSSVITFLSFSPSASIPTELRXXSTSAAAGVGLPPSTASKDAAT 38
           T LP ++V T  SFS SAS  T     +++    +  PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,450
Number of Sequences: 5004
Number of extensions: 18689
Number of successful extensions: 85
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)