Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L09
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    80   4e-16
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    30   0.41 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    27   2.9  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   5.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   5.0  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   8.8  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 36/69 (52%), Positives = 49/69 (71%)
 Frame = +3

Query: 540 KVSGPPILPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYALSIKDGVMVLSATHRYR 719
           K+  PP LPPHL + ILN +T    + ++LP PNHV+LNHL A + + GV+ LSAT RY 
Sbjct: 225 KLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYH 284

Query: 720 KKYVTTLLY 746
           +KYVTT ++
Sbjct: 285 RKYVTTAMF 293


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 567 PHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYALSI 677
           PH     L+   P+SC+P L P P   + +H Y +S+
Sbjct: 134 PHSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSL 170


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1096

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 129  FKKITYMVICM*VCLINYYVKLCSTNEQS-*QKCVQVSTL 13
            +KK TY+ +C  + L N Y  LC  NE     +C+Q++ L
Sbjct: 1035 WKKKTYVCLCTTIGLCNIY--LCFANENHIISRCLQITRL 1072


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 585 ILNKDTPLSCEPTLLPEPNH 644
           I+N++ P S E T LP+P+H
Sbjct: 413 IVNRNNPSSGESTTLPQPSH 432


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 548 WSTNIATTPLTG--YT*QGYSTFL*ADSTSGA*SCDVKSLVCFVNKRWSYGTVCNTSLSQ 721
           WSTN+ T P T   Y+  G S        S   +    S+    +K  S GT+  T++S 
Sbjct: 150 WSTNLPTNPTTTAIYSTSGSSNI--TTPYSNRITNSNTSVNDITSKYLSVGTITLTTISG 207

Query: 722 EICYHSSIXAN 754
              Y S+  AN
Sbjct: 208 SDLYTSTFPAN 218


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 226 CHSLGWLLPAFPI*FSTKKILKNCICNLIPNI 131
           C S  WL+  F    + +   KN I  L+PNI
Sbjct: 600 CFSSEWLIKCFEDMIANESASKNEIMKLVPNI 631


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 513 EIPQSKPWEKVSGPPILPPHLLQVILNK-DTPLSCEPTLL 629
           ++ ++K W  +S   +LP  ++ V+ NK D+ L C+  LL
Sbjct: 257 QVYRNKHWFPISTEDLLPNDVVSVLHNKEDSGLPCDLLLL 296


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 505 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 413
           PP S+ +T+ +TL++ ++ L  + +  L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,108
Number of Sequences: 5004
Number of extensions: 67317
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)