Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L09
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0055 + 11934465-11934467,11935117-11935173,11935258-11935566 60 1e-09
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 49 3e-06
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804... 49 3e-06
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 37 0.020
12_01_0701 - 5968970-5969353 30 2.3
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 30 2.3
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134... 29 3.0
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 28 7.0
01_06_0715 + 31416338-31416500,31416601-31416710,31416808-314168... 28 7.0
12_01_0072 + 609254-609722,610355-610421,610652-610745,610984-61... 28 9.2
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 9.2
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 28 9.2
>09_03_0055 + 11934465-11934467,11935117-11935173,11935258-11935566
Length = 122
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +3
Query: 552 PPILPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYALSIKD-GVMVLSATHRYRKKY 728
PP++PPHL +L+ P + + LP P +V+LNHLY V+ L THR+R K+
Sbjct: 52 PPLVPPHLQHTLLSFP-PSQDDSSSLPPPQNVVLNHLYIEKENSRSVVALGITHRFRAKF 110
Query: 729 VTTLLYXPI 755
VT +LY P+
Sbjct: 111 VTVVLYKPV 119
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +3
Query: 552 PPILPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYALS--IKDGVMVLSATHRYRKK 725
PPILPP L+ +L DT S E TL +P HV+LNHLY ++ L THR++ K
Sbjct: 262 PPILPPQLVMSVLG-DTDNSEEQTL--KPKHVVLNHLYIEKGWGSQSLLALGVTHRFQSK 318
Query: 726 Y 728
Y
Sbjct: 319 Y 319
>03_02_0815 +
11477618-11477845,11478206-11478337,11480227-11480408,
11480500-11480662,11481480-11481794
Length = 339
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = +3
Query: 513 EIPQSKPWEKVSGPPILPPHL-LQVILNKDTPLSCEPTLLPEPNHVMLNHLYALSIKDG- 686
+ P+ K + K PP+LP L L V+ ++++ SC P H++LNHL+ I+ G
Sbjct: 261 QAPEEKDFSKE--PPVLPSQLHLGVLNSQNSDESCA-----RPQHIVLNHLF---IEKGW 310
Query: 687 ----VMVLSATHRYRKKYVTTLLYXPI 755
++ L THR+ KYVT +LY PI
Sbjct: 311 GAHPLVALGLTHRFESKYVTVVLYKPI 337
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 36.7 bits (81), Expect = 0.020
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 519 PQSKPWEKVSGPPILPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLY-ALSIKDGVMV 695
P K + K PP LPP L +LN + P H +L H++ V
Sbjct: 234 PDDKEFTKE--PPALPPQLHLGVLNSRGGSGGKEGECAMPKHNVLGHVFIGKGTPPMVAA 291
Query: 696 LSATHRYRKKYVTTLLYXPI 755
L T R++ K+VT +LY I
Sbjct: 292 LGTTFRFQSKFVTKVLYKAI 311
>12_01_0701 - 5968970-5969353
Length = 127
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 552 PPILPPHLLQVILNKDTPLSCEPTLLPEPNHVMLNHLYAL 671
PP+LPP LQ + P C LLP H+ L HL+A+
Sbjct: 51 PPLLPPSGLQSWQREGAPTVCH-RLLPS-RHLPLLHLHAI 88
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 29.9 bits (64), Expect = 2.3
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 360 GAPYYTKAVPESDIEYTEQRE-RSNTLTDGSKIVD--DIKVLPTVFKWEGGGKQ-EIPQS 527
G YY DI Y + R N TD + +VD + K L F + K+ +IP
Sbjct: 140 GDKYYLYRHIIFDILYNKDRVIEINVHTDQNAVVDLTEDKELDVEFLYTAKWKETQIPFE 199
Query: 528 KPWEKVSGPPILPPHL 575
K EK S ++P HL
Sbjct: 200 KRMEKYSSSSVMPHHL 215
>06_03_1368 -
29612463-29612638,29613135-29613222,29613334-29613474,
29613561-29613595,29613990-29614054,29614286-29614335,
29614417-29614521,29614608-29614688,29614771-29614852,
29614941-29614995,29615111-29616164,29617202-29617289,
29617379-29617485,29617568-29617686,29617784-29617994
Length = 818
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/91 (24%), Positives = 34/91 (37%)
Frame = +3
Query: 369 YYTKAVPESDIEYTEQRERSNTLTDGSKIVDDIKVLPTVFKWEGGGKQEIPQSKPWEKVS 548
+ +AV D E+ S+ L+DG + D P + + Q++ S E
Sbjct: 304 FQLEAVEAMDSTNKEEHGNSHALSDGPMLQDTTNAAPNINEVGMEESQQVLTSNELEDDG 363
Query: 549 GPPILPPHLLQVILNKDTPLSCEPTLLPEPN 641
ILP H I ++ L C PN
Sbjct: 364 KRNILPEHSDITIQPSESVLDCSSHESSAPN 394
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 507 KQEIPQSKPWEKVSGPPILPP 569
K EIP+ P K S PPI PP
Sbjct: 288 KDEIPREDPKIKPSAPPIAPP 308
>01_06_0715 +
31416338-31416500,31416601-31416710,31416808-31416880,
31416988-31417135,31417867-31418133,31418234-31418576,
31418665-31418802,31419389-31419514,31419626-31419838,
31419918-31420164,31420247-31420446,31420538-31420891,
31420984-31421568
Length = 988
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 583 TCKRCGGNIGGPDTFSHG 530
TC RCGG G PD +HG
Sbjct: 41 TCARCGGEYGAPDP-AHG 57
>12_01_0072 +
609254-609722,610355-610421,610652-610745,610984-611127
Length = 257
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 520 GISCFPPPSHLKTVGNTLISSTILLPSVRVFDLSRCSVYSISLSGTALV 374
G + PPP+ L T L + P + V DL RC +I L+ TALV
Sbjct: 145 GTASCPPPATLATKPLRLRVLGLFHPRLLVIDLKRCYPMNI-LTHTALV 192
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 207 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 305
N ++WH +N+ + + GP P G T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 589 SITCKRCGGNIGGPDTFSHGLDCGISCFPP 500
SI C CGG + + GLDC C P
Sbjct: 61 SIDCGGCGGGVAVAANATGGLDCPTRCALP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,527,287
Number of Sequences: 37544
Number of extensions: 428728
Number of successful extensions: 1161
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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