Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L06
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 91 2e-19
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 63 4e-11
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 38 0.002
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 2.2
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.2
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 2.9
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 2.9
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 26 5.0
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 8.8
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 90.6 bits (215), Expect = 2e-19
Identities = 66/189 (34%), Positives = 93/189 (49%), Gaps = 6/189 (3%)
Frame = +1
Query: 115 KFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQ 294
K +ID D G DDA+ LA + +L+GVTT GN + N ++L +A R
Sbjct: 2 KIIIDTDPGQDDAITALLAIASPEI----ELLGVTTVAGNVPVSMTTRNALQMLDLAGRP 57
Query: 295 DVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTEN---AVNALIHLSKTHE 465
D+P+Y GS L++ P IT G G V P P EN AV+ +I + +E
Sbjct: 58 DIPVYAGSNKPLLRAP-ITATHVHGASGFEGAVLPP--PSRKENEGHAVDFIIDTLRNNE 114
Query: 466 -GNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIHT--EEYPTAEFNAHMDVEAY 636
G +TI TIG LTN+ALA+ P + R + + AG P AEFN ++D A
Sbjct: 115 PGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAAEFNIYVDPHAA 174
Query: 637 HVVTENANP 663
+V + P
Sbjct: 175 QMVLSSGIP 183
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 63.3 bits (147), Expect = 4e-11
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 3/179 (1%)
Frame = +1
Query: 124 IDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQDVP 303
ID D G DD +A+ LAA H +++GV+T +GNT + + N ++++ QDV
Sbjct: 21 IDCDPGHDDVVALTLAAC--AGHC--KILGVSTVHGNTTLEFTTKNALAVMELL-NQDVD 75
Query: 304 IYRGSKSSLVKTPEI-TDYFGKDGLGDSGDVYPDLVPPH-TENAVNALIHLSKTHEGNLT 477
++ G+ L++ T G +GL + PD T +AV A+ + +T
Sbjct: 76 VHAGAAKPLMRESAFATHIHGTNGLAGI-SLLPDYPKKKATPDAVFAMYTTISNYPEPVT 134
Query: 478 IITIGALTNLALAIKTDPTFLGRLAH-VYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTE 651
++ G LTN+AL + T P+ + +++G AEFN + D EA +V E
Sbjct: 135 LVATGPLTNIALLLATYPSVTDNIERFIFMGGSTGIGNITSQAEFNVYADPEAARLVLE 193
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 37.5 bits (83), Expect = 0.002
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 14/181 (7%)
Frame = +1
Query: 88 CECMSGIKGKFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQ 267
C + K +IDND G D +F AL A Q++GVT G+ D+ +
Sbjct: 17 CAYAASAASKVIIDND-GLTDLQVLF--AL----QAKQQILGVTAIYGDYTLDDSLFLAS 69
Query: 268 RILKVAK-RQDVPIYRGSKSSLVKTPEITDYFGKDGLGD---SGDVYPDLVPPHTEN--- 426
+L +P + G+ L++T T ++ G G P+ +T N
Sbjct: 70 DVLSTGNLTYCIPSFAGAAQPLLRTNN-TFQIWQELYGSYVWQGYWQPEYETANTNNESY 128
Query: 427 -------AVNALIHLSKTHEGNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIHT 585
A +I + K + +TI+ G +TNLA+A+ P + I G++ +
Sbjct: 129 IYNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDS 188
Query: 586 E 588
+
Sbjct: 189 Q 189
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 671 LQYSPSHRCRNIVTLAGSG 727
L YS RC NIV +AGSG
Sbjct: 742 LTYSAIRRCDNIVLIAGSG 760
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 YNNQRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTENAVN 435
+N Q LKV D P+Y +++ ++ + Y + L + V DL+ A+N
Sbjct: 468 HNQQASLKVMHSYDPPLYNDTRAWMIYEENLPSYLSSNFLKEEPVVLFDLL-----RALN 522
Query: 436 ALIHLSKTH--EGNLTI 480
+ + K+ EGN+ I
Sbjct: 523 DPVFVKKSFCTEGNIGI 539
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 88 CECMSGIKGKFVIDNDAGGDDA 153
C+CMS I+G F I GG A
Sbjct: 58 CDCMSNIRGSFYIGLLTGGPSA 79
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 343 EITDYFGKDGLGDSGDVYPDLVPPHTENA 429
E+ ++F DGL D G P + PP +A
Sbjct: 61 EMREFFNFDGLPDQGLNLPSIAPPSLSHA 89
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 713 KLQYFCTCEKGNIVTFSGFA-FSVTTW 636
K + C+KGN+V GF+ FS+ W
Sbjct: 105 KQDFLNDCKKGNLVREDGFSIFSILRW 131
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 551 HTSTSEPDTYIPKNIRRQSSMLTWT 625
H+S ++ DTY+P +R+ +L T
Sbjct: 635 HSSAAQDDTYLPSPTKRKMPLLRQT 659
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,465
Number of Sequences: 5004
Number of extensions: 62256
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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