Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L06
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical pr...    94   1e-19
AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical...    85   4e-17
Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    30   2.0  
X59156-9|CAB56747.1|  108|Caenorhabditis elegans transposase pro...    29   3.6  

>U23139-5|AAN65330.1|  374|Caenorhabditis elegans Hypothetical
           protein F13H8.3 protein.
          Length = 374

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 12/189 (6%)
 Frame = +1

Query: 115 KFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAKRQ 294
           K +ID D   DD   + +A   +      ++I +TT +G    +  + N  R+L+   + 
Sbjct: 24  KLIIDTDGVYDDIRGLTIALTNQNV----EVIAITTVHGGVTANQSAANVARLLRAIGKH 79

Query: 295 DVPIYRGSKSSLVKTPEI---TDYFGKDGLGDSGDVYPDLVP-----PHTENAVNALIHL 450
           +VP++ G++ SLV    I    + FG DG+G   DV P  +P         NAV+A+I+L
Sbjct: 80  NVPVFIGAQDSLVPKGPIQVWEELFGSDGIGGVPDVEPKTLPSDFNSAQVGNAVDAIINL 139

Query: 451 SKTHEGNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHI----HTEEYPTAEFNAH 618
           +K+ + ++ ++ +G LTN+A+AI+ DP    R+  V I  G+     +T+   TAEFN  
Sbjct: 140 TKSTK-DIILVGLGPLTNIAMAIRKDPDISKRVKQVVIMGGNYLGVGNTQFNSTAEFNFL 198

Query: 619 MDVEAYHVV 645
           MD EA H+V
Sbjct: 199 MDPEAAHIV 207


>AL032637-12|CAA21614.1|  338|Caenorhabditis elegans Hypothetical
           protein Y43F8C.13 protein.
          Length = 338

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
 Frame = +1

Query: 109 KGKFVIDNDAGGDDAMAIFLAALFEKYHAGPQLIGVTTSNGNTNEDNVSYNNQRILKVAK 288
           K K VID+D   DD  AI LA      H   +++  T  +G    D    N +R ++   
Sbjct: 5   KVKLVIDSDGVSDDVRAISLAL----QHPKAEILAFTAVHGCVTVDQACANIKRTIRAND 60

Query: 289 RQDVPIYRGSKSSLVKTPE---ITDYFGKDGLGDSGDVYPDLVPPHTE----NAVNALIH 447
           R ++P+Y+G+  S++  P+   ++D+FG DG+GD  + +P +     E    +A  ALI 
Sbjct: 61  RSNIPVYKGAAKSILSLPKDDTVSDFFGIDGIGDKPEEFPKVERSDFEGEGKHASLALID 120

Query: 448 LSKTHEGNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIH----TEEYPTAEFNA 615
           + + +  + T++TIG LTN+A+A++    F    + + I  G+ +     +   +AE+N 
Sbjct: 121 ILRENR-DATLVTIGPLTNVAIALQLCEEFSTYPSRLVIMGGNYYAVGNVDGGSSAEYNF 179

Query: 616 HMDVEAYHVVTENANPEKVTIFPF 687
           H D EA  +V        +TI P+
Sbjct: 180 HGDPEAASIVLRRMKC-PITIVPW 202


>Z32683-1|CAA83621.1|  812|Caenorhabditis elegans Hypothetical
           protein R07E5.1 protein.
          Length = 812

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 280 VAKRQDVPI-YRGSKSSLVKTPEITDYFGKDGLGDSGDVYPDLVPPHTENAVNALIHLSK 456
           +AKR +VP  Y GS +  V   + TD+  KD L D G V   L  P+T N +     L K
Sbjct: 535 LAKRFNVPHPYPGSDTVGVPALQKTDWKRKDRLADIGGVSATLGLPNTANEIEMRERLLK 594

Query: 457 T 459
           +
Sbjct: 595 S 595


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 265 QRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSG 387
           Q+++ V +  +V I  G   S  KT ++  Y  +DG GDSG
Sbjct: 448 QKMMNVIRENNVVIIVGETGS-GKTTQLAQYLLEDGFGDSG 487


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 265 QRILKVAKRQDVPIYRGSKSSLVKTPEITDYFGKDGLGDSG 387
           Q+++ V +  +V I  G   S  KT ++  Y  +DG GDSG
Sbjct: 448 QKMMNVIRENNVVIIVGETGS-GKTTQLAQYLLEDGFGDSG 487


>X59156-9|CAB56747.1|  108|Caenorhabditis elegans transposase
           protein.
          Length = 108

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 441 KSIDGIFCMRRYQIWVDIPTVSEAVFTEVVRDFRGFHQRGFRTSINWHVL 292
           ++++ I   R   +W    TV+  +FT +  D +G   +GF+  I W ++
Sbjct: 49  RAVEKIQTRRNRSVWCK--TVNLIIFTSICSDCQGASFKGFQYQILWKII 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,885,071
Number of Sequences: 27780
Number of extensions: 354148
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)