Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L06
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.4  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 511 LAIKTDPTFLGRLAHVYIGAGHIHTEEYPTAEFNAHMDVEAYHVVTENANPEKVTIFPFS 690
           +A+ ++    G +  V++G  H H     +   N H+ VE    + +N +  + TI   S
Sbjct: 522 IAVHSEQNVPGAVVRVFLGPKHDHQGRPISISKNQHLFVELDQFI-QNLHAGENTIIRNS 580

Query: 691 Q 693
           Q
Sbjct: 581 Q 581


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 310 RGSKSSLVKTPEI 348
           +GSK S++ TPEI
Sbjct: 280 KGSKCSMITTPEI 292


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 226 NGNTNEDNVSYNNQRILKVAKRQDVPIYRGS 318
           N N N   + YN   I ++     VPIY G+
Sbjct: 315 NNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 345


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 226 NGNTNEDNVSYNNQRILKVAKRQDVPIYRGS 318
           N N N   + YN   I ++     VPIY G+
Sbjct: 326 NNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 356


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 214 VTTSNGNTNEDNVSYNN 264
           +T  N NTN  N + NN
Sbjct: 228 ITAGNANTNASNNNNNN 244


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 471 PYHHHYRRADQLSFGH*NGP 530
           P+HHH+ +   L   H   P
Sbjct: 350 PHHHHHHQTQSLQHLHYRQP 369


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 223 SNGNTNEDNVSYNNQRILKVAKRQDVPIYRGS 318
           +N N N   + YN   I ++     VPIY G+
Sbjct: 342 NNYNNNYKKLYYNINYIEQIPVPVPVPIYCGN 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,014
Number of Sequences: 438
Number of extensions: 4476
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)