Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L03
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23646-2|AAK67235.1| 304|Caenorhabditis elegans Hypothetical pr... 131 6e-31
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 2.6
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 2.6
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 2.6
U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical pr... 29 4.6
U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ... 28 6.1
AF016451-12|AAB65994.1| 317|Caenorhabditis elegans Hypothetical... 28 6.1
>L23646-2|AAK67235.1| 304|Caenorhabditis elegans Hypothetical
protein F44E2.10 protein.
Length = 304
Score = 131 bits (316), Expect = 6e-31
Identities = 70/180 (38%), Positives = 98/180 (54%), Gaps = 1/180 (0%)
Frame = +3
Query: 210 LIRIFISLLCVIKTATGLGEIIYAINAGGPAHTDIYGIHYEKDPLQGRIGTASDYGKQLV 389
LI I ++ KT ++ A+N GGP YGI Y D + G +SD+G Q
Sbjct: 23 LISFLIVVVSSAKTVNLKNRVVAAVNCGGPDALGAYGIEYSADTSED--GVSSDHGMQY- 79
Query: 390 MIGRVNPKDEILYQTERYHHSTFGYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNG 569
D +YQTER+ +F YD+P ++DG+YV++LKFSEVYF K+F++ +N
Sbjct: 80 SFNNAEVDDMEIYQTERWSKESFSYDVPISEDGEYVIILKFSEVYFQKAGEKIFNIRIN- 138
Query: 570 DHTIVADLDIFDKV-GRGVAHDEYIPYTIKNGKLYYNEXESDIRGGKIKVEFIXGYRDNP 746
H V +LDIFD GRG AHD YIP IK + + + + GK+ +E G DNP
Sbjct: 139 SHLAVKNLDIFDAAGGRGFAHDVYIPVVIKGSSISVSGHSREYK-GKVIIELSKGPHDNP 197
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 459 GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 638
G +P N G +VLVL + V S P +V + N D T++ D G V D
Sbjct: 10504 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10559
Query: 639 IPYTIKNGK 665
I GK
Sbjct: 10560 IIENDDEGK 10568
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 459 GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 638
G +P N G +VLVL + V S P +V + N D T++ D G V D
Sbjct: 10549 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10604
Query: 639 IPYTIKNGK 665
I GK
Sbjct: 10605 IIENDDEGK 10613
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +3
Query: 459 GYDIPANKDGDYVLVLKFSEVYFSSPNMKVFDVVLNGDHTIVADLDIFDKVGRGVAHDEY 638
G +P N G +VLVL + V S P +V + N D T++ D G V D
Sbjct: 10549 GTPLPTNDSGHFVLVLPGATVNDSKPTDEVIVSITNPDGTLLGT----DSTGAFVTEDGP 10604
Query: 639 IPYTIKNGK 665
I GK
Sbjct: 10605 IIENDDEGK 10613
>U58753-6|AAC24440.1| 705|Caenorhabditis elegans Hypothetical
protein W03B1.8 protein.
Length = 705
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 671 VEFPVLYGVRYIFIMSNTSSYFIKNIQIGYYSMVSIQDDIKYFHVWGTE 525
VE + V +IFI+S +YF + +Q GY+ +++I + + ++ TE
Sbjct: 149 VEIQFYFLVPFIFIIS---TYFSEILQYGYFCVIAITSLVYFNVIFSTE 194
>U51999-3|AAA96084.1| 306|Caenorhabditis elegans Hypothetical
protein C43H6.7 protein.
Length = 306
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 680 FIIVEFPVLYGVRYIFIMSNTSS-YFIKNIQIGYYSMVSI 564
FII+ + LY ++ ++ T YF+ NIQ YY +I
Sbjct: 52 FIIIPYEQLYKPAWLLLLLGTCGLYFLFNIQYHYYKARTI 91
>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
protein Y38C9A.1 protein.
Length = 1484
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +1
Query: 289 PEVLLIQTSTVFIMKKIHYRDELALHQIMVNNWL*SAELILKMKYFIKL 435
P+ + + T F ++HY+ A+++ ++NN L S +++ K+ +K+
Sbjct: 739 PQKVQTKKQTNFEPLEVHYQAFSAVYKYLINNELPSLKILRKLHVLLKI 787
>AF016451-12|AAB65994.1| 317|Caenorhabditis elegans Hypothetical
protein C03A7.13 protein.
Length = 317
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 201 MSRLIRIFISLLCVIKTATGLGEIIYAINAGGPAHTD 311
M R +FI L ++ T +++ INA G +H D
Sbjct: 1 MKRTSILFILFLSLVSTLVNTSNVVFFINAIGKSHLD 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,442,763
Number of Sequences: 27780
Number of extensions: 341991
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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