Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L02
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 30 0.30
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 2.1
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 2.8
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 3.7
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 4.9
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 6.5
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 6.5
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 8.6
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ... 25 8.6
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 25 8.6
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 25 8.6
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -3
Query: 222 KGRSTMDSLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLN 64
K RST ++SI ++ + F+ ++ L + + DN+NLS L N N
Sbjct: 787 KARSTATTISISLSTVSDVFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNAN 839
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 7 LSHSTREKIDYETYENLWDI 66
L+ + KIDYET + +WDI
Sbjct: 911 LTFLKKSKIDYETADKIWDI 930
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 324 ASVISKICEHLVKNRLEWFIESKGLLSPN 238
ASV + ++ ++ WFI KGL S N
Sbjct: 442 ASVAKMVLNDFMRGKIPWFIGPKGLSSSN 470
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -3
Query: 453 LSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIALASVISKI 304
+S ++S + S ++ + ++ IH+P + +S +PI + V S I
Sbjct: 667 ISTVDSSIGSASVVEKGVANSIVDIHQPTAKADKGNSKKPIYIGIVSSSI 716
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 411 PSWKIHEVIPIHKPNKPI 358
P W + E ++KPNKPI
Sbjct: 660 PDWFLDEETTVNKPNKPI 677
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 411 PSWKIHEVIPIHKPNKP-INDPSSYRPIA 328
PS +IH ++P P P IND +PI+
Sbjct: 568 PSPRIHTIVPNSAPEHPSINDYKILKPIS 596
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = -1
Query: 614 LLSSPSMIVAIHSFPLAFQNSKGFFQGLGT 525
L ++P +++ + + FQ+ +GF+Q + T
Sbjct: 485 LNNTPDILILLEEVDILFQDDRGFWQAVST 514
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 58 TNFHKFHNQSSLW*NGL 8
+N H HN+SSLW +G+
Sbjct: 67 SNGHNNHNESSLWTSGI 83
>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 125 TSKNAANTDLLYENANLMSVIKMLRLSIVLLPFLNPNW 238
T K AA +YE N V ++ +L + +P+L+P++
Sbjct: 166 TEKEAAMAKEVYETLNNQLVSELPQLIALRVPYLDPSF 203
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 123 SAAYDNVNLSVLKQKMINLNIPQIFISFIINLLSGR 16
S NV LSVL K + IP++ SFI SG+
Sbjct: 24 SPLLSNVGLSVLAYKATAMFIPRVGPSFIKRGFSGK 59
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = -3
Query: 297 HLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAFSYNKSVLAAFLDVSA 118
H + + + G LS + + +S ++S F TD +SY S++ L
Sbjct: 186 HTSSQKSTFLLRCVGALSTTEIEYPNEKSVLES---FETDSENTYSYRFSLIRHALKALQ 242
Query: 117 AYDNVNLSVLKQKMINLNI 61
VNL + + +++ I
Sbjct: 243 VGSKVNLRIDENGTLSIQI 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,455
Number of Sequences: 5004
Number of extensions: 60729
Number of successful extensions: 211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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