Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P07_F_L02
(743 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 115 6e-26
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 115 6e-26
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 114 1e-25
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 102 4e-22
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 102 6e-22
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 101 1e-21
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 100 2e-21
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 98 1e-20
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 98 1e-20
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 98 1e-20
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 98 1e-20
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 97 2e-20
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 96 4e-20
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 96 4e-20
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 94 2e-19
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 94 2e-19
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 90 3e-18
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 90 3e-18
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 90 3e-18
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 90 3e-18
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 89 4e-18
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 87 3e-17
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 86 6e-17
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 76 4e-14
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 69 7e-12
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 56 5e-08
AE014296-525|ABC66127.1| 317|Drosophila melanogaster CG34025-PA... 29 6.7
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 115 bits (277), Expect = 6e-26
Identities = 63/169 (37%), Positives = 94/169 (55%)
Frame = -3
Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 343
+PG DGIP L+NL S +++ +++ N L +G P WKI +++PI KP KP ++P S
Sbjct: 478 SPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPES 537
Query: 342 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 163
YRPI+L S +SKI E L+K RL F++ L Q+GFR G +T+ I+ +
Sbjct: 538 YRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESI 597
Query: 162 SYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLLSGR 16
+SV LD+ AA+D V L K+ + P I + N L+ R
Sbjct: 598 QSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHR 646
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 115 bits (277), Expect = 6e-26
Identities = 63/169 (37%), Positives = 94/169 (55%)
Frame = -3
Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 343
+PG DGIP L+NL S +++ +++ N L +G P WKI +++PI KP KP ++P S
Sbjct: 426 SPGIDGIPNISLKNLPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPES 485
Query: 342 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 163
YRPI+L S +SKI E L+K RL F++ L Q+GFR G +T+ I+ +
Sbjct: 486 YRPISLLSGLSKILEKLIKLRLVKFLDIHNTLPTVQYGFRNGLNTILPTLKLRNYIKESI 545
Query: 162 SYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLLSGR 16
+SV LD+ AA+D V L K+ + P I + N L+ R
Sbjct: 546 QSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTPIYLIKIVQNFLTHR 594
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 114 bits (274), Expect = 1e-25
Identities = 56/154 (36%), Positives = 84/154 (54%)
Frame = -3
Query: 558 ELKGVLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPI 379
E++ +++ + +PG D + Y L+NL+ + L + N ILT+G P +W+ +IPI
Sbjct: 441 EIENSVAKAKGKSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPI 500
Query: 378 HKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 199
KPNKP +D +SYRPI+L S + K E ++ RL WFI+ L+S NQ F+ STMD+
Sbjct: 501 SKPNKPPSDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHNQVAFKSNHSTMDA 560
Query: 198 LSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNL 97
L A S V D A+D V +
Sbjct: 561 LLRIQHFASNALSTKNHVSILATDFERAFDRVGI 594
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 102 bits (245), Expect = 4e-22
Identities = 62/181 (34%), Positives = 92/181 (50%)
Frame = -3
Query: 558 ELKGVLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPI 379
EL L L+ APG + I Y ++N + + + L N I S +IP ++K +IPI
Sbjct: 437 ELSSALQTLKGCAPGLNRISYQMIKNSSHTTKNRITKLFNEIFNS-HIPQAYKTSLIIPI 495
Query: 378 HKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 199
KPN SSYRPI+L I+KI + ++ RL W + L++ QFGF+KG+ST D
Sbjct: 496 LKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLINDKQFGFKKGKSTSDC 555
Query: 198 LSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLLSG 19
L D + S + L LD S A+D V + + Q++ I +I N +S
Sbjct: 556 L--LYVDYLITKSKMHTSLVT-LDFSRAFDRVGVHSIIQQLQEWKTGPKIIKYIKNFMSN 612
Query: 18 R 16
R
Sbjct: 613 R 613
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 102 bits (244), Expect = 6e-22
Identities = 59/156 (37%), Positives = 84/156 (53%)
Frame = -3
Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 343
+PG D I + L S + Y L N+I G P WK+ ++I I KP K SS
Sbjct: 451 SPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASS 510
Query: 342 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 163
YRPI+L S ISK+ E + RL ++ +QFGFR+ T++ ++ T+IR AF
Sbjct: 511 YRPISLLSCISKLFEKCLLIRLNQHQTYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAF 570
Query: 162 SYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQ 55
Y + A FLDVS A+D V L L K I +++P+
Sbjct: 571 EYREYCTAVFLDVSQAFDKVWLDGLMFK-IKISLPE 605
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 101 bits (241), Expect = 1e-21
Identities = 51/140 (36%), Positives = 77/140 (55%)
Frame = -3
Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 343
+PG D + + L+ L + Y + N+IL P WK+ ++ IHKP KP P S
Sbjct: 454 SPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQWKMAAILMIHKPGKPEESPES 513
Query: 342 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 163
YRPI+L S +SK+ E L+ NRL + + +L +QFGFR+G ST++ + I AF
Sbjct: 514 YRPISLLSSLSKLWERLIANRLNDIMTERRILPDHQFGFRQGHSTVEQVHRLTKHILQAF 573
Query: 162 SYNKSVLAAFLDVSAAYDNV 103
+ A F+D+ A+D V
Sbjct: 574 DDKEYCNAVFIDMQQAFDRV 593
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 100 bits (239), Expect = 2e-21
Identities = 56/177 (31%), Positives = 92/177 (51%)
Frame = -3
Query: 546 VLSRLRDSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPN 367
++ + + APG D I + L+ L + Y + N+I+ P WK+ + IHKP
Sbjct: 445 IVRQSNNKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPG 504
Query: 366 KPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIF 187
KP +P+SYRPI+L ISK+ E L+ R+ +E++G+ +QFGFR G T++ L
Sbjct: 505 KPEREPASYRPISLLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHRV 564
Query: 186 MTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLLSGR 16
+ I A+ + + FLD+ A+D V + Q I +P + + + L GR
Sbjct: 565 VEQILTAYDSKEYCNSLFLDIREAFDRV-WHIGLQLKIKQTLPAPYFGLLKSYLEGR 620
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 98.3 bits (234), Expect = 1e-20
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 369 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 428
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 429 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 488
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV---NLSVLKQKMINLNIPQIFISFIIN 31
++ I AF + A FLD+S A+D V L + K++ N+ I S++ N
Sbjct: 489 QIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTN 548
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 98.3 bits (234), Expect = 1e-20
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 604
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV---NLSVLKQKMINLNIPQIFISFIIN 31
++ I AF + A FLD+S A+D V L + K++ N+ I S++ N
Sbjct: 605 QIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTN 664
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 98.3 bits (234), Expect = 1e-20
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 447 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 506
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 507 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 566
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV---NLSVLKQKMINLNIPQIFISFIIN 31
++ I AF + A FLD+S A+D V L + K++ N+ I S++ N
Sbjct: 567 QIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTN 626
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 98.3 bits (234), Expect = 1e-20
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 604
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV---NLSVLKQKMINLNIPQIFISFIIN 31
++ I AF + A FLD+S A+D V L + K++ N+ I S++ N
Sbjct: 605 QIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTN 664
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 97.5 bits (232), Expect = 2e-20
Identities = 65/180 (36%), Positives = 92/180 (51%), Gaps = 4/180 (2%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKHAQVKM 544
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
I KP K +NDP SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 545 ILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 604
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV---NLSVLKQKMINLNIPQIFISFIIN 31
++ I AF + A FLD+S A+D V L + K++ N+ I S++ N
Sbjct: 605 QIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTN 664
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 96.3 bits (229), Expect = 4e-20
Identities = 55/156 (35%), Positives = 83/156 (53%)
Frame = -3
Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 343
+PG D I L L + + L N+I G P WK ++ I KP K PSS
Sbjct: 449 SPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSS 508
Query: 342 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 163
YRPI+L + +SK+ E ++ R+ + L +QFGFR+ T++ ++ ++IR AF
Sbjct: 509 YRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAF 568
Query: 162 SYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQ 55
+ + A FLDV+ A+D V L L K+I L +PQ
Sbjct: 569 EHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL-LPQ 603
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 96.3 bits (229), Expect = 4e-20
Identities = 55/156 (35%), Positives = 83/156 (53%)
Frame = -3
Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 343
+PG D I L L + + L N+I G P WK ++ I KP K PSS
Sbjct: 449 SPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDKTQPSS 508
Query: 342 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 163
YRPI+L + +SK+ E ++ R+ + L +QFGFR+ T++ ++ ++IR AF
Sbjct: 509 YRPISLLTCLSKLFEKMLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAF 568
Query: 162 SYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQ 55
+ + A FLDV+ A+D V L L K+I L +PQ
Sbjct: 569 EHREYCTAIFLDVAQAFDRVWLDGLLFKIIKL-LPQ 603
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 94.3 bits (224), Expect = 2e-19
Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 4/180 (2%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 485 ELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKM 544
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
I KP K N+P SYRPI+L S +SKI E L+ RL K + +QFGFRK +
Sbjct: 545 ILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEHGSEQ 604
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV---NLSVLKQKMINLNIPQIFISFIIN 31
++ I AF + A FLD+S A+D V L + K++ N+ I S++ N
Sbjct: 605 QIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTN 664
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 94.3 bits (224), Expect = 2e-19
Identities = 64/180 (35%), Positives = 91/180 (50%), Gaps = 4/180 (2%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL + L++S APG D I ++ L Y + + NSIL G P +WK +V
Sbjct: 497 ELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHAQVKM 556
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
I KP K N+P SYRPI+L S +SK+ E L+ RL K + +QFGFRK T
Sbjct: 557 ILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQ 616
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV---NLSVLKQKMINLNIPQIFISFIIN 31
++ I AF + A FLD+S A+D V L + K++ N+ I S++ N
Sbjct: 617 QIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILPYNLYIILESYLTN 676
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 90.2 bits (214), Expect = 3e-18
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 2/183 (1%)
Frame = -3
Query: 558 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPN-QFGFRKGRSTM 205
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P+ QFGFRK
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILPKRL-YDIDSFAKAIPSHQFGFRKDHGAE 606
Query: 204 DSLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLL 25
L+ I AF A FLD++ A+D V L K+ L IP+ + N L
Sbjct: 607 HQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYL 665
Query: 24 SGR 16
S R
Sbjct: 666 SNR 668
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 89.8 bits (213), Expect = 3e-18
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 2/183 (1%)
Frame = -3
Query: 558 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 41 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 100
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPN-QFGFRKGRSTM 205
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P+ QFGFRK
Sbjct: 101 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL-YDIDSFAKAIPSHQFGFRKDHGAE 159
Query: 204 DSLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLL 25
L+ I AF A FLD++ A+D V L K+ L IP+ + N L
Sbjct: 160 HQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYL 218
Query: 24 SGR 16
S R
Sbjct: 219 SNR 221
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 89.8 bits (213), Expect = 3e-18
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 2/183 (1%)
Frame = -3
Query: 558 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPN-QFGFRKGRSTM 205
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P+ QFGFRK
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL-YDIDSFAKAIPSHQFGFRKDHGAE 606
Query: 204 DSLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLL 25
L+ I AF A FLD++ A+D V L K+ L IP+ + N L
Sbjct: 607 HQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYL 665
Query: 24 SGR 16
S R
Sbjct: 666 SNR 668
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 89.8 bits (213), Expect = 3e-18
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 2/183 (1%)
Frame = -3
Query: 558 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
EL G+++ L APG D + + NL Y + + N+IL +G+ P WK +
Sbjct: 488 ELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISM 547
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPN-QFGFRKGRSTM 205
I KP K +SYRPI+L S +SK+ E ++ RL + I+S P+ QFGFRK
Sbjct: 548 IPKPGKSPFALNSYRPISLLSGLSKLLERILLKRL-YDIDSFAKAIPSHQFGFRKDHGAE 606
Query: 204 DSLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLL 25
L+ I AF A FLD++ A+D V L K+ L IP+ + N L
Sbjct: 607 HQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLYKLSRL-IPRYLFDLLENYL 665
Query: 24 SGR 16
S R
Sbjct: 666 SNR 668
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 89.4 bits (212), Expect = 4e-18
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 1/172 (0%)
Frame = -3
Query: 558 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
E+K ++++L APG D + ++ L D L + + + NS+L G P +WK +I
Sbjct: 244 EVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFPKAWKSASIIM 303
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
IHK K D SYRPI+L + KI E L+ NRL + + QFGFR T +
Sbjct: 304 IHKTGKTPTDVDSYRPISLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPE 363
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFI 46
L + A + + AFLD+ A+D V L K L PQ+++
Sbjct: 364 QLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYL 415
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 86.6 bits (205), Expect = 3e-17
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 1/172 (0%)
Frame = -3
Query: 558 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
E+K ++++L APG D + ++ L D L + + NS+L G P +WK +I
Sbjct: 442 EVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFPKAWKSASIIM 501
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
IHK K D SYRP +L + KI E L+ NRL + + QFGFR T +
Sbjct: 502 IHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPE 561
Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFI 46
L + A + + AFLD+ A+D V L K L PQ+++
Sbjct: 562 QLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYL 613
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 85.8 bits (203), Expect = 6e-17
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 8/190 (4%)
Frame = -3
Query: 558 ELKGVLSRLR-DSAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
E+ R+R + APG DGIP ++ + F L G P WK +++
Sbjct: 406 EVVEAAKRIRPNKAPGIDGIPGVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVL 465
Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
+ K P N P SYRP+ L ++ K+ E ++ R+E ES L Q+GFRKG+ST+D
Sbjct: 466 LLKGKGPANVPRSYRPLCLLDIVGKLFERILYARIELITESPTGLQGQQYGFRKGKSTLD 525
Query: 201 SLSIFMTDIRLAFSYN-------KSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFIS 43
+L R A N K LDV A++ ++ M NL +P
Sbjct: 526 ALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILGAMRNLGVPDYIRG 585
Query: 42 FIINLLSGRM 13
I N R+
Sbjct: 586 VIGNYFRDRV 595
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 76.2 bits (179), Expect = 4e-14
Identities = 49/145 (33%), Positives = 74/145 (51%)
Frame = -3
Query: 447 LINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWF 268
L N+I G P WK +I I KP K PS YRPI+L + +SK+ E + R+
Sbjct: 16 LFNAITKIGYFPQKWKKSIIIMIPKPEKDKTQPS-YRPISLLTCLSKLFEKGLLLRISPH 74
Query: 267 IESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVL 88
+++ L QF F ++ ++ T+IR AF + + A FLDV+ A+D V L L
Sbjct: 75 LKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRVWLDGL 134
Query: 87 KQKMINLNIPQIFISFIINLLSGRM 13
K+I L +PQ + + L R+
Sbjct: 135 MFKIIQL-LPQNIHKLLKSYLDKRV 158
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 68.9 bits (161), Expect = 7e-12
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 2/166 (1%)
Frame = -3
Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
E+ ++RL+ +PG DGI + + + + + SL + + G P WK V+
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497
Query: 381 IHK-PNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTM 205
+ K P+K +PSSYR I L V K+ E ++ NR+ + +G QFGFR+GR
Sbjct: 498 LLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVL-PEGCRW--QFGFRQGRCVE 554
Query: 204 DSLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINL 67
D+ + + S + VL F+D A+DNV S ++ +L
Sbjct: 555 DAWRHVKSSV--GASAAQYVLGTFVDFKGAFDNVEWSAALSRLADL 598
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 56.0 bits (129), Expect = 5e-08
Identities = 44/169 (26%), Positives = 78/169 (46%)
Frame = -3
Query: 525 SAPGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPS 346
S+PG DGI + + + L ++N IL GN+P S ++ + I K P
Sbjct: 358 SSPGPDGITPKSAREVPSGIM---LRIMNLILWCGNLPHSIRLARTVFIPK-TVTAKRPQ 413
Query: 345 SYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLA 166
+RPI++ SV+ + ++ RL I P Q GF D+ +I +R +
Sbjct: 414 DFRPISVPSVLVRQLNAILATRLNSSIN----WDPRQRGFLPTDGCADNATIVDLVLRHS 469
Query: 165 FSYNKSVLAAFLDVSAAYDNVNLSVLKQKMINLNIPQIFISFIINLLSG 19
+ +S A LDVS A+D+++ + + + P+ F+ ++ N G
Sbjct: 470 HKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEG 518
>AE014296-525|ABC66127.1| 317|Drosophila melanogaster CG34025-PA
protein.
Length = 317
Score = 29.1 bits (62), Expect = 6.7
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Frame = -3
Query: 483 NLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKP--NKPI---NDPSSYRPIALAS 319
NLN+ CL + L + SI N+ + I + +P + P+ NDP +P+ S
Sbjct: 8 NLNEDCLQHILKYL-SIKDLVNLADTLPRFRQILLDRPPTSYPVHHGNDPDGVKPVLYYS 66
Query: 318 VISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIR-LAFSYNKSVL 142
++ +VKN +++ G++ + + + L F+ D R L NK L
Sbjct: 67 TVAIKLLRIVKNN----VKTLGVIQGHSY-------DKEDLGNFVKDFRILTQGRNKIDL 115
Query: 141 AAFL-DVSAAYDNVNLSVLKQKMINLNIP 58
L ++S D S + +++N+P
Sbjct: 116 RYCLGEMSRLEDMFRFSSCSRDYLSVNVP 144
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,154,332
Number of Sequences: 53049
Number of extensions: 589562
Number of successful extensions: 1497
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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