Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P07_F_L02
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    65   4e-11
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    60   1e-09
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    60   1e-09
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    60   2e-09
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    35   0.070
AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical...    31   0.65 
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical...    29   2.6  
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    28   6.1  
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      28   6.1  
AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 4/156 (2%)
 Frame = -3

Query: 558 ELKGVLSRLRDSAP-GCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
           EL  +  ++  SA  G DGI    ++ L     S+   L N  L++  IP  WK   VI 
Sbjct: 332 ELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIM 391

Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
           I KP K     SSYRPI+L S I+K+ E  +  R++  IES      +Q GF+   ST  
Sbjct: 392 IPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEHSTTT 447

Query: 201 SLSIFMTDIRLAFSYN---KSVLAAFLDVSAAYDNV 103
           ++     DI    +     +  + A LD+ AA+D V
Sbjct: 448 AVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKV 483


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
 Frame = -3

Query: 558  ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
            E++ VL    +  A G D I   FL++ +D+ +       N  L S N+P  WK  +   
Sbjct: 551  EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 610

Query: 381  IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
            I K     N   +YRPI L  V+ K+    + NR+   ++    +   Q GFR+  ST+D
Sbjct: 611  IFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTID 667

Query: 201  SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV 103
             +      + +   Y   +   F+D   A+D+V
Sbjct: 668  HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSV 700


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
 Frame = -3

Query: 558 ELKGVLSRLRDS-APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIP 382
           E++ VL    +  A G D I   FL++ +D+ +       N  L S N+P  WK  +   
Sbjct: 290 EIRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTL 349

Query: 381 IHKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMD 202
           I K     N   +YRPI L  V+ K+    + NR+   ++    +   Q GFR+  ST+D
Sbjct: 350 IFKKGDREN-LENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTID 406

Query: 201 SLSIFMTDIRLAFSYNKSVLAAFLDVSAAYDNV 103
            +      + +   Y   +   F+D   A+D+V
Sbjct: 407 HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSV 439


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 39/140 (27%), Positives = 62/140 (44%)
 Frame = -3

Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSS 343
           A G D I   FL++ +D+ +       N  L S N+P  WK  +   I K     N   +
Sbjct: 393 AAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LEN 451

Query: 342 YRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDSLSIFMTDIRLAF 163
           YRPI L  V+ K+    + NR+   ++    +   Q GFR+  ST+D +      + +  
Sbjct: 452 YRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQRLLEVGR 509

Query: 162 SYNKSVLAAFLDVSAAYDNV 103
            Y   +   F+D   A+D V
Sbjct: 510 EYQIPLTLVFIDFKKAFDTV 529


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -3

Query: 522 APGCDGIPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHK 373
           A G D I   FL++  D  +       N  L SGNIP  WK  +   I K
Sbjct: 413 AAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNIPKDWKTSKTTLIFK 462


>AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical
           protein Y53F4B.13 protein.
          Length = 927

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 378 HKPNKPINDPSSYRPIALASVISKICEHLVKNRLEWFIESKGLLSPNQFGFRKGRSTMDS 199
           HK     N  SS++P +    ISK+ +    +R E F+E +   S  + G++ G    D 
Sbjct: 15  HKEQMVTNRTSSFQPKSTEDSISKLAKMRAADRREEFMEERASFSAVKRGYQAGDDEEDD 74

Query: 198 LS 193
            +
Sbjct: 75  FT 76


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 554 SSERLKEMNESLLSCWERREGCESXXLLSIDGTNGGANLSRNKSTVLLS 700
           S  R K +N+SLLS  + +E  E+   L IDG N   N   +++ V+LS
Sbjct: 30  SPTRQKSINKSLLSLDKTQEFSETSQKLKIDGENRSEN---HRNAVILS 75


>Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical
           protein F38E11.12 protein.
          Length = 626

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 275 SSLFLTRCSQILEITEANAIGLYDDGSLMGLLGL 376
           SS+F+  C Q++EITE N I  + +G ++G + L
Sbjct: 465 SSMFIIVCGQMVEITEDNEIDHF-EGEILGDVNL 497


>AF098992-12|AAC67453.2|  328|Caenorhabditis elegans Hypothetical
           protein F53C3.1 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 474 DSCLSYFLSLINSILTSGNIPPSWKI-HEVIPIHKPNKPINDPSSYRPIALASVISKICE 298
           D C S+F  LI+ IL  G      K+ +EV+ I +  +  N  + Y+ I   S ++KI +
Sbjct: 213 DDCESWFYLLIDLILEGGLPWRHCKVKNEVLKIKENTRKDNRAALYKGIPQTSELNKILD 272

Query: 297 HL 292
           ++
Sbjct: 273 YI 274


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 414 PPSWKIHEVIPIHKPNKPINDPSSYRPI 331
           PP  + HE+ PI  PN P ++P+   PI
Sbjct: 149 PPKQEFHELCPISTPN-PNSNPNQLTPI 175


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 414 PPSWKIHEVIPIHKPNKPINDPSSYRPI 331
           PP  + HE+ PI  PN P ++P+   PI
Sbjct: 149 PPKQEFHELCPISTPN-PNSNPNQLTPI 175


>AL032675-1|CAA21779.1|  963|Caenorhabditis elegans Hypothetical
           protein VT23B5.1 protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = -3

Query: 504 IPYSFLQNLNDSCLSYFLSLINSILTSGNIPPSWKIHEVIPIHKPNKPINDPSSYRPIAL 325
           +P S  +   DS L + +S I  +    + PP   +H+V   +  N+ +N  +++   + 
Sbjct: 122 LPTSESECYEDSHLPFHISEIQKLFIESSDPPPEALHQV---YIRNRLLNIIANFLANSN 178

Query: 324 ASVISKICEHLVKN-RLEWFIESKGLLSP 241
             V  ++C+ LV+    +W      L+SP
Sbjct: 179 TQVQQQMCDQLVRTLGFDWLF---ALMSP 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,869
Number of Sequences: 27780
Number of extensions: 316957
Number of successful extensions: 763
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)